PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 676777778 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 438aa MW: 47932.9 Da PI: 6.7332 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.3 | 1.7e-05 | 312 | 357 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq 676777778 312 ASKKPRVRKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 357 5667799999**************98.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.544 | 307 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.59E-6 | 310 | 361 | No hit | No description |
SMART | SM00353 | 9.8E-4 | 311 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.3E-11 | 313 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-8 | 321 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 438 aa Download sequence Send to blast |
MDSANLHQLQ DQLQLVGSSS SSSSLENNSD PSCYGASSVH QWSPGGISLN SVSLSHNFNN 60 EMLNTRDHNN DNNTSECMSL SNIHNPSLIP QQDFSLQWSH DQSSYHHHEG IHKIKEELSS 120 STTSDHQQGM PKFTDMLTNP GITNYLKINE HKDYTKKLLL NSISSGFPIN GDYSSSLPSS 180 SSSNSSSSPS SQSHRGSFSQ IYPSVNISSL SESRRMSNIP RPFDMNMQVL DGRLFEGNVL 240 VPPLNSQEIS NLEMSRGSYP PFGLPFPHHL QQTLHHPSSS STHQMEMYSN EPQPSEGKRH 300 NFLMATKAGE NASKKPRVRK EKLGDRIAAL QQLVSPFGKT DTASVLMEAI GYIKFLQSQI 360 ETLSVPYMRS SRNRPGKASQ LGSLPQEGDD EEKRDLRSRG LCLVPLSCMT YVTGDGGDGG 420 GGVGSGFWPT PPGFGGGT |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 676777778 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189555 | 0.0 | AC189555.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006E24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478109.1 | 0.0 | PREDICTED: transcription factor bHLH110 isoform X1 | ||||
Swissprot | Q9SFZ3 | 0.0 | BH110_ARATH; Transcription factor bHLH110 | ||||
TrEMBL | A0A1J3EMR7 | 0.0 | A0A1J3EMR7_NOCCA; Uncharacterized protein | ||||
STRING | Bostr.15697s0089.1.p | 0.0 | (Boechera stricta) | ||||
STRING | XP_010478109.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9351 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G27660.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|