PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676777558
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 163aa    MW: 17977.2 Da    PI: 10.313
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676777558genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-192070256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               +++GVr ++ +gr++AeIrdp++   ++r++lg+f+t+e Aa a+++a+++++g+
  676777558 20 RFRGVRKRP-WGRYAAEIRDPTK---KTRVWLGTFDTPEAAAHAYDKAALRFRGA 70
               69*******.**********864...6*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-132069IPR001471AP2/ERF domain
PROSITE profilePS5103224.0922077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-322077IPR001471AP2/ERF domain
SMARTSM003802.9E-362083IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-222077IPR016177DNA-binding domain
CDDcd000181.31E-222077No hitNo description
PRINTSPR003675.9E-102132IPR001471AP2/ERF domain
PRINTSPR003675.9E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MTPTVKTAAV KTNGGNNENR FRGVRKRPWG RYAAEIRDPT KKTRVWLGTF DTPEAAAHAY  60
DKAALRFRGA KAKTNFPCVG DNESPSQSST IDSSSSIPDL NLGSVDSMFP FPKIQVRSGM  120
IVVDQDAARS ESESSSVVMD RSPKRRSQVF LDFDLNLPPK PEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-212178664ATERF1
3gcc_A4e-212178664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00164DAPTransfer from AT1G28370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676777558
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109733.18e-70PREDICTED: ethylene-responsive transcription factor 11-like
SwissprotQ9C5I33e-57ERF76_ARATH; Ethylene-responsive transcription factor 11
TrEMBLA0A1J3DUB21e-72A0A1J3DUB2_NOCCA; Ethylene-responsive transcription factor 11
TrEMBLA0A1J3FRL11e-72A0A1J3FRL1_NOCCA; Ethylene-responsive transcription factor 11
STRINGBra010880.1-P3e-69(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-53ERF domain protein 11
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dubois M, et al.
    The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis.
    Plant Physiol., 2015. 169(1): p. 166-79
    [PMID:25995327]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Zhou X, et al.
    The ERF11 Transcription Factor Promotes Internode Elongation by Activating Gibberellin Biosynthesis and Signaling.
    Plant Physiol., 2016. 171(4): p. 2760-70
    [PMID:27255484]