PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676777474
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Dof
Protein Properties Length: 462aa    MW: 51237.7 Da    PI: 10.0303
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676777474genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.75.1e-383090262
     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
               ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++
  676777474 30 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 90
               67899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027016.0E-333388IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-263488IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9013488IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103672IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MQSKNMIVAP SHQQQQQQAH QQQQQQPHQP QPQLKCPRCD SSNTKFCYYN NYSLSQPRHF  60
CKACKRYWTR GGTLRNVPVG GSYRKNKRVK RPATATATAA STASTTTSSS PNNPHQQISH  120
FSSMNHHPLF YGLSDHVSSC SNLPMIPSRF SDSSKTSSSS GLESEFLSSG FSGLSALGLG  180
LPHHMSHDHT INGSFINNST TNKPFLLSGL FGSSVSSSSS TLLQHPHKPM NNGGEMMGNS  240
HLQTLASLQD LHVGGNNEDV NKEGKLVQIS GNINGFMSSS LDPSNYNNMW NNANERRSLD  300
QRGKIRGNVD RGHYKAPSDP LHLTISIIFC ALFKKNKRGS RFVQDLLCST VKFTQGKVHM  360
GWYFFSLGLG GYIWVNLSFT WGPHFGFKPT TYGSMYVTTE LWVQTWSLVR CLCKVGTSSL  420
PVSSCPFLSN DSFRARVGGY FFVKHFGSVL FGHMDFISFL CG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676777474
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934820.0AB493482.1 Arabidopsis thaliana At1g28310 mRNA for hypothetical protein, partial cds, clone: RAAt1g28310.
GenBankAC0210440.0AC021044.5 Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593055.11e-150PREDICTED: dof zinc finger protein DOF1.4-like
RefseqXP_013692400.11e-150dof zinc finger protein DOF1.4-like isoform X1
RefseqXP_013692401.11e-150dof zinc finger protein DOF1.4-like isoform X1
RefseqXP_022562220.11e-150dof zinc finger protein DOF1.4-like isoform X2
RefseqXP_022562221.11e-150dof zinc finger protein DOF1.4-like isoform X2
SwissprotQ9FZA41e-138DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLA0A078JJD91e-149A0A078JJD9_BRANA; BnaCnng51540D protein
TrEMBLA0A0D3D6961e-149A0A0D3D696_BRAOL; Uncharacterized protein
STRINGBo7g048220.11e-149(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.11e-110Dof family protein