PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676776702

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Trihelix

Protein Properties

Length: 319aa MW: 34891.9 Da PI: 5.9323

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676776702	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.6	5.2e-21	45	122	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt+qe+l+Li+++r e+r+rrg ++ + ++ ++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ +++ 676776702 45 RWTRQEILVLIQGKRVAENRVRRG-------RAAGMALGRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIKEETESYWVMRNDV 122 8********************9.......7788999***************************************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.0E-8	45	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MALEQLGLGV TTVDGDGNGN GGGENSSAPS NEGGDDGVKT ARLPRWTRQE ILVLIQGKRV 60 AENRVRRGRA AGMALGRHGV NRGPVQCRKR WSNLAGDYKK IKEWESQIKE ETESYWVMRN 120 DVRREKKLPG FFDKEVYDIV DGGVIPPANP ALALGLAPAS TEGLLSGLDR REPERSLDKL 180 NSASAPKSLQ DIIDKEKQAA CEADQGSTLS SFIFYLEGRV KEKHPEAANP GAGSTSQEDR 240 KRKRTSAGED EEEEGEATKS SQNQLIEILE RNGQLLAAQL EVQNSNLRLD REQRKDHGDN 300 LVAVLSKLAD AVAKIADKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676776702

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189292	1e-101	AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024003747.1	1e-172	trihelix transcription factor ASR3
Swissprot	Q8VZ20	1e-167	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A1J3I6I5	1e-169	A0A1J3I6I5_NOCCA; Uncharacterized protein
STRING	scaffold_401930.1	1e-168	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-136	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]