PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676776560
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Dof
Protein Properties Length: 554aa    MW: 63718.4 Da    PI: 4.1924
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676776560genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.62.7e-3852110260
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvPvG+grrk+k 
  676776560  52 PDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKSCHRYWTAGGALRNVPVGAGRRKSKP 110
                68999***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-3251109IPR003851Zinc finger, Dof-type
PfamPF027011.5E-3154109IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.24856110IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105894IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1902455Biological Processnegative regulation of stem cell population maintenance
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MATQDSQGIK IFGKTIALNV NITHTIKNEE EKQPPDPAVR SSSSDLTAEK RPDKIIACPR  60
CKSMETKFCY FNNYNVNQPR HFCKSCHRYW TAGGALRNVP VGAGRRKSKP PGRVIVEIAS  120
VFSISPIPPK QRFLELLPSP GFGFSIVQLK KMGSIEDNQW VDMIIDKIGV ALSKSIEFWT  180
ELTKDIYDEQ PTHDTTGQPN NDKSGQEDSS QNTTVAEVNE TPIQHWAMCA KEIPSQHWAM  240
RVSKIPKSLM QEQRDDNDCD DYNEEKEKEK EKEKEEDDEG TDEGTVSESS DEDMWELNLK  300
TSNCYHHDYE EANRSRLKRE DAYEQLKNVD MPSEEEDESW DDDYDEEKEE EVDETAVSKS  360
YESMKGSLRF CYLPPHLLHK QNSALYMMRG NPYQLSKNDD TSSKNVDEEQ EEETTVSESC  420
VKMSEINLET SATSYIPSHN RNEEDTGSSL RGGYELLKND DTSSEEEEEE DDSWDNEEEV  480
MEWVPKHENM SDISYESLVG HYDEDEDKHE DEDEVSDKLQ GFVDVKEEEV ANKSEFSEVE  540
TLSPECDWVY VTRN
Cis-element ? help Back to Top
SourceLink
PlantRegMap676776560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023412e-82AC002341.3 Arabidopsis thaliana chromosome 2 clone T14G11 map TEn5, complete sequence.
GenBankAK2213082e-82AK221308.1 Arabidopsis thaliana mRNA for putative DOF zinc finger protein, complete cds, clone: RAFL25-04-B19.
GenBankBT0104962e-82BT010496.1 Arabidopsis thaliana At2g34140 gene, complete cds.
GenBankCP0026852e-82CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632570.11e-99PREDICTED: protein bfr2
TrEMBLA0A3P6CA811e-100A0A3P6CA81_BRAOL; Uncharacterized protein
STRINGBo4g041180.15e-99(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34140.11e-67Dof family protein