PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676775222
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 265aa    MW: 30386.4 Da    PI: 10.1658
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676775222genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-161661147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l+++v+ +G+ +W+ Ia++m+ gRt+k+c++rw++ 
        676775222 16 RGHWKPAEDVKLKELVAVFGPQHWNHIAAKMQ-GRTGKSCRLRWFNQ 61
                     899*****************************.***********996 PP
2Myb_DNA-binding56.85e-1869112247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++ eE+e+l+ a++++G++ W++Ia+ ++ gRt++ +k++w+ +
        676775222  69 RAFSDEEEEKLLAAHRKFGNK-WSLIAKLFP-GRTDNAVKNHWHVL 112
                      689******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7451162IPR017930Myb domain
SMARTSM007171.2E-121564IPR001005SANT/Myb domain
SuperFamilySSF466894.69E-2816113IPR009057Homeodomain-like
PfamPF002494.5E-151661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-241769IPR009057Homeodomain-like
CDDcd001679.85E-111960No hitNo description
PROSITE profilePS5129426.68263117IPR017930Myb domain
SMARTSM007171.2E-1567115IPR001005SANT/Myb domain
PfamPF002491.6E-1569112IPR001005SANT/Myb domain
CDDcd001676.86E-1270113No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MHQENMKKKL ARVCSRGHWK PAEDVKLKEL VAVFGPQHWN HIAAKMQGRT GKSCRLRWFN  60
QLDPRIEKRA FSDEEEEKLL AAHRKFGNKW SLIAKLFPGR TDNAVKNHWH VLMARKLRKQ  120
STSYSKIRKR HTPSPDESTP LNPQQTFNLF PGSVSDESTE FRNYSWKMPK EESANLKDQF  180
LQEEYCSSRM PMQYLGHHHH HHFSTFPADS LALLTTQVSI SQPSSSSSPP TSSLSTSEAE  240
NTMVAKYFET TKPSGFIDFL GVGAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-311511726128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676775222
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613545.11e-143PREDICTED: transcriptional activator Myb-like
TrEMBLA0A3N6Q1N21e-137A0A3N6Q1N2_BRACR; Uncharacterized protein
STRINGBra025652.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-103myb domain protein 110