PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676775108

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Dof

Protein Properties

Length: 449aa MW: 48765 Da PI: 5.2727

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676775108	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.6e-39	123	182	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ 676775108 123 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNP 182 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-32	119	180	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.8E-32	125	181	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	127	181	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	129	165	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MSDPAIKLFG KTIPLQELVD SSSTEHQDQN PVRLPDSCTV DDEEMGDSCL GEGGDDGGLH 60 DSESEKEEKD KDCGEESLRD ESSNVGTGAS SVTEKTETAK AAKTEEESSP NGTCSQEGKL 120 KKPDKILPCP RCNSMETKFC YYNNYNVNQP RHFCKKCQRY WTAGGTMRNV PVGAGRRKNK 180 NPASHYNRHV SITSAEAMQK AVSRTGDLQH PNGTNLLTFG SDSVLCESMA SGLNLAEKSM 240 LKTQTGLQEA NEGLKITVPL NPPSEEAGTI SPLPKVPCFP GPPPTWPYAW NGVSWTVVPF 300 YPPPAYWSCP GVSPGTWNSF TWMPQPTSPS GGSGPNSPTL GKHSRDESVG EPGTTLEETE 360 SLGREKSKSE RCLWVPKTLR VDDPEEAAKS SIWETLGIKK DEKADTFGAF RSSNKEKSNL 420 SEGKLSGRRP ELQANPAALS RSANFHESS

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MSDPAIKLFG KTIPLQELVD SSSTEHQDQN PVRLPDSCTV DDEEMGDSCL GEGGDDGGLH  60
DSESEKEEKD KDCGEESLRD ESSNVGTGAS SVTEKTETAK AAKTEEESSP NGTCSQEGKL  120
KKPDKILPCP RCNSMETKFC YYNNYNVNQP RHFCKKCQRY WTAGGTMRNV PVGAGRRKNK  180
NPASHYNRHV SITSAEAMQK AVSRTGDLQH PNGTNLLTFG SDSVLCESMA SGLNLAEKSM  240
LKTQTGLQEA NEGLKITVPL NPPSEEAGTI SPLPKVPCFP GPPPTWPYAW NGVSWTVVPF  300
YPPPAYWSCP GVSPGTWNSF TWMPQPTSPS GGSGPNSPTL GKHSRDESVG EPGTTLEETE  360
SLGREKSKSE RCLWVPKTLR VDDPEEAAKS SIWETLGIKK DEKADTFGAF RSSNKEKSNL  420
SEGKLSGRRP ELQANPAALS RSANFHESS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676775108

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352939	0.0	AK352939.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-18-K13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001318708.1	0.0	cycling DOF factor 2
Refseq	NP_568567.1	0.0	cycling DOF factor 2
Refseq	NP_851106.1	0.0	cycling DOF factor 2
Swissprot	Q93ZL5	0.0	CDF2_ARATH; Cyclic dof factor 2
TrEMBL	A0A178UGH8	0.0	A0A178UGH8_ARATH; CDF2
STRING	AT5G39660.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13795	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	0.0	cycling DOF factor 2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]