PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676774838 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 187aa MW: 21789.1 Da PI: 7.9656 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.5 | 2.7e-14 | 25 | 76 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h e+Er+RR+++ s + Lr+llP + ++K s ++ + +Av+YI +Lq 676774838 25 KMMHREIERQRRQEMASLYTSLRSLLPLHF--IQGKRSTSDQVNEAVNYITYLQ 76 789*************************65..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.878 | 23 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-11 | 25 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.17E-9 | 25 | 80 | No hit | No description |
Pfam | PF00010 | 2.3E-11 | 25 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.81E-15 | 25 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-6 | 29 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MDDCREKRRR CTKLRVSTDN NDMEKMMHRE IERQRRQEMA SLYTSLRSLL PLHFIQGKRS 60 TSDQVNEAVN YITYLQRKIK EMSSRRDELM LLSRGSFLDD SEDEMKMTNH VVVRHCLVGL 120 EIVFSSRCGS QPRLSSVLQL LSENGLSLLN SISSIVDDRL IYTIQAEVND MTLIDLGKLE 180 ESLVRMK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676774838 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK317430 | 4e-66 | AK317430.1 Arabidopsis thaliana AT5G51780 mRNA, complete cds, clone: RAFL24-28-D24. | |||
GenBank | BT010952 | 4e-66 | BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds. | |||
GenBank | BT011640 | 4e-66 | BT011640.1 Arabidopsis thaliana At5g51780 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009107212.1 | 1e-119 | PREDICTED: transcription factor bHLH36-like | ||||
Swissprot | Q9FLI1 | 5e-85 | BH036_ARATH; Transcription factor bHLH36 | ||||
TrEMBL | A0A397XIY0 | 1e-116 | A0A397XIY0_BRACM; Uncharacterized protein | ||||
STRING | Bra022562.1-P | 1e-111 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4479 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 5e-76 | bHLH family protein |