PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676774836
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 235aa    MW: 27433.5 Da    PI: 9.5113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676774836genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-132576255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               +++h e+Er+RR+++ s +  Lr+llP  +   ++K s a+ + +Av+Y+ +Lq
  676774836 25 KMMHREIERQRRQEMASLYTSLRSLLPLHF--IKGKRSTADQVNEAVNYVMYLQ 76
               789*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-142189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.6942375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-102589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-92580No hitNo description
PfamPF000101.1E-102576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-72981IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDDCREKRRR CTKLRVSTDN NDMEKMMHRE IERQRRQEMA SLYTSLRSLL PLHFIKGKRS  60
TADQVNEAVN YVMYLQRKIK ELSSRRDELV LLSKGNLDDS KDEMVVGNHV VVHQCLLGVE  120
IVFGTRCCRG QPRLSRVLEV LSENGLSVLH SISSIVDDKL IYTIQAERLK LDNVSVNDSL  180
LTERAKWPKT WRTCNSPCSS HPQYRQQMRN RQFSSIRIKG DEAFESAMEM WLATR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676774836
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674763.11e-97transcription factor bHLH36-like
RefseqXP_013710558.11e-97transcription factor bHLH36-like
SwissprotQ9FLI12e-72BH036_ARATH; Transcription factor bHLH36
TrEMBLA0A078IC522e-96A0A078IC52_BRANA; BnaAnng08070D protein
TrEMBLA0A3P6A1T72e-96A0A3P6A1T7_BRACM; Uncharacterized protein
STRINGBra022562.1-P7e-97(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.16e-75bHLH family protein