PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676774528
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 647aa    MW: 70832 Da    PI: 9.6483
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676774528genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19136186255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  676774528 136 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAFRMRG 186
                8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-31135194No hitNo description
Gene3DG3DSA:3.30.730.106.5E-32135194IPR001471AP2/ERF domain
PfamPF008472.3E-13136186IPR001471AP2/ERF domain
SMARTSM003806.8E-41136200IPR001471AP2/ERF domain
PROSITE profilePS5103224.276136194IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23136196IPR016177DNA-binding domain
PRINTSPR003672.4E-10137148IPR001471AP2/ERF domain
PRINTSPR003672.4E-10160176IPR001471AP2/ERF domain
PfamPF095988.3E-15300367IPR019084Stm1, N-terminal
SMARTSM012332.7E-36424532IPR006861Hyaluronan/mRNA-binding protein
PfamPF047743.3E-29424531IPR006861Hyaluronan/mRNA-binding protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MMNGQSEMDS DYALLESIRR HLLGGDNELR FSESIPSSCF TESWGDLPLK ENDSEDMLVY  60
GILKDAFNGA YETSSPSSDL SCLSDFLDFE PSSKPPTYQS HNGFPVVKTE PSESFAPVVE  120
KPKVSVAVAA PAKGKHYRGV RQRPWGKFAA EIRDPAKNGA RVWLGTFETA EDAALAYDRA  180
AFRMRGSRAL LNFPLRVNSG EPDPVRITSK RSYTSSSSSS SSSSEKPKRR RKTETVPSEL  240
QVKCEVACKV LVLNVAAESK VVPYISEWNR VVNKVFSHSK NPSKAKKVFR FRFFTKKPEM  300
TTANPFDPIG VDVEDPSQIV VALPKKVEKT ASVQPAKSAA KLPSKPLPPA QAVRESRNAP  360
SRGRGGGAGR GPRGMFNPGG DRPHEPTVRD GERHSGFRGY RESGGRGGHV GGFANGKTGD  420
VDRPKRVFER RSGTGRGNDL KREGGGRGNW GTPEDDIPLA TEEATAEVEK SPVAEKEGGE  480
DETTDAKKDA PADEQEEKEP ENKEMTLEEY EKILEEKKKA LQATKVEERK VDTKVFESMQ  540
QLSNKKTNEE EIFIKLGSDK DKRKDAAEKE EKAKKSLSIN EFLKPANGET YNPRGGYRGR  600
GGRDGRGQRD GGRGGRGQRD VNGGNQKYGG APAPAIGDSA QFPSLGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-41132201170ATERF1
3gcc_A1e-41132201170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds RNA. {ECO:0000250|UniProtKB:Q9SQ56}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676774528
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593146.11e-163PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein
RefseqXP_013707220.11e-163RGG repeats nuclear RNA binding protein C-like isoform X1
SwissprotO235931e-103RGGB_ARATH; RGG repeats nuclear RNA binding protein B
TrEMBLA0A0D3D9S81e-160A0A0D3D9S8_BRAOL; Uncharacterized protein
STRINGBo7g077370.11e-161(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-74ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Landsberger M,Lorković ZJ,Oelmüller R
    Molecular characterization of nucleus-localized RNA-binding proteins from higher plants.
    Plant Mol. Biol., 2002. 48(4): p. 413-21
    [PMID:11905967]
  2. Reumann S, et al.
    Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms.
    Plant Cell, 2007. 19(10): p. 3170-93
    [PMID:17951448]
  3. Hajduch M, et al.
    Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression.
    Plant Physiol., 2010. 152(4): p. 2078-87
    [PMID:20118269]
  4. Černý M, et al.
    Proteome and metabolome profiling of cytokinin action in Arabidopsis identifying both distinct and similar responses to cytokinin down- and up-regulation.
    J. Exp. Bot., 2013. 64(14): p. 4193-206
    [PMID:24064926]