PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676774396

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

CPP

Protein Properties

Length: 602aa MW: 65405.1 Da PI: 6.6948

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676774396	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.7	3.5e-16	316	354	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk 676774396 316 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 354 689**********************************96 PP
2	TCR	52.3	1.1e-16	401	439	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC+++g+ Cs +C+Ce+CkN 676774396 401 RHKRGCNCKKSNCLKKYCECYQSGVGCSINCRCEGCKNA 439 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.4E-19	315	356	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.458	316	441	IPR005172	CRC domain
Pfam	PF03638	5.6E-12	318	353	IPR005172	CRC domain
SMART	SM01114	4.2E-17	401	442	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.5E-12	403	439	IPR005172	CRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MDTPEKTVTQ IGTPVSKLKV ENSPVFNYIN SLSPINTVKS LPIAHTFGPL SFASPHSVFT 60 SPHVVSHKGS RFKSNSSDLS KVGPGSTGEE VVDEALLEAE PPQIHQNDCT NITTPKVIKG 120 GSCEDGETDL QKMCDGNVKR ISDTPDWEAL ISETDILMYG SPTDSEASRC FLQRSTDSKT 180 RSSGGTKSRL EPVSNSNEPE SSDALSILHR GVRRRCLDFE MPGNNKQTLG ESSSGFVVPS 240 IGLHLNAIAM SSKDSNVGNE YSFSGNVKVG LQNSTTELLP SHDIVRENVT VEAAGQSVEE 300 VPNSRKSEQA GDVESSCKRC NCKKSKCLKL YCECFAAGVY CIEPCSCIDC FNKPIHEETV 360 LATRKQIESR NPLAFAPKVI RNADSIMEVG DDASKTPASA RHKRGCNCKK SNCLKKYCEC 420 YQSGVGCSIN CRCEGCKNAF GRKDGSLFGG MDSEQDNETS GKSKSQQNVE SFNSVPIPPS 480 TPMPLRQPLA ELPISSNNRM IPQHSQHLHG ASGSSLYDGQ SFSKQDMSLL SHSRFETITE 540 ESADDIENLI QSPITNINAV SPNSKRVSLP QHDSSESTLW RRNGARKLLL SIPTFPSLTP 600 HN

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MDTPEKTVTQ IGTPVSKLKV ENSPVFNYIN SLSPINTVKS LPIAHTFGPL SFASPHSVFT  60
SPHVVSHKGS RFKSNSSDLS KVGPGSTGEE VVDEALLEAE PPQIHQNDCT NITTPKVIKG  120
GSCEDGETDL QKMCDGNVKR ISDTPDWEAL ISETDILMYG SPTDSEASRC FLQRSTDSKT  180
RSSGGTKSRL EPVSNSNEPE SSDALSILHR GVRRRCLDFE MPGNNKQTLG ESSSGFVVPS  240
IGLHLNAIAM SSKDSNVGNE YSFSGNVKVG LQNSTTELLP SHDIVRENVT VEAAGQSVEE  300
VPNSRKSEQA GDVESSCKRC NCKKSKCLKL YCECFAAGVY CIEPCSCIDC FNKPIHEETV  360
LATRKQIESR NPLAFAPKVI RNADSIMEVG DDASKTPASA RHKRGCNCKK SNCLKKYCEC  420
YQSGVGCSIN CRCEGCKNAF GRKDGSLFGG MDSEQDNETS GKSKSQQNVE SFNSVPIPPS  480
TPMPLRQPLA ELPISSNNRM IPQHSQHLHG ASGSSLYDGQ SFSKQDMSLL SHSRFETITE  540
ESADDIENLI QSPITNINAV SPNSKRVSLP QHDSSESTLW RRNGARKLLL SIPTFPSLTP  600
HN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-16	318	438	12	120	Protein lin-54 homolog
5fd3_B	1e-16	318	438	12	120	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00044	PBM	Transfer from AT3G22760	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676774396

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF205142	1e-174	AF205142.1 Arabidopsis thaliana CXC domain containing TSO1-like protein 1 (SOL1) mRNA, complete cds.
GenBank	AY099653	1e-174	AY099653.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds.
GenBank	AY128837	1e-174	AY128837.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024015205.1	0.0	protein tesmin/TSO1-like CXC 3
Swissprot	Q8L548	0.0	TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBL	A0A398AQK7	0.0	A0A398AQK7_BRACM; Uncharacterized protein
STRING	Bo1g104900.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]