PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676773628
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Dof
Protein Properties Length: 373aa    MW: 40054.8 Da    PI: 7.9314
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676773628genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1252.3e-3944105263
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                k++al+cprC+s ntkfCyynnysl+qPryfCk CrryWt+GG+lrn+P+Ggg rknk+sss
  676773628  44 KDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTEGGSLRNIPIGGGIRKNKRSSS 105
                7899******************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-312996IPR003851Zinc finger, Dof-type
PfamPF027012.7E-3345102IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.61248102IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105086IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDTAKWPQEF VVKPMNEIVT NTCSKQTSPS GAAPAVERKA RPEKDQALNC PRCNSLNTKF  60
CYYNNYSLTQ PRYFCKDCRR YWTEGGSLRN IPIGGGIRKN KRSSSSSSSS NSNSSSSPSS  120
SSSSKKTLFV NNNSQKPTPL QQLNPKTGEN AHEAAAKVQE LAFSQSQGFG NAHEVKDLNL  180
AFSQGFGIGH HHQQQQHQHH HSIPEFLQVV PSSMKNNPLV STSSALELLG ISNSSSSNPR  240
PAFMPYPNVQ DSSVYTAAAA SDFGLSYPQF QEFMRPALGF SLDGGYGGDP LHQEDGSSGT  300
NNGRPLLPFE SLKLPVSSSS TNSGGGNGNV DGNDHHHNDH KHGKEDGEAD QSVGFWNGML  360
SAGASAASGG GSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00210DAPTransfer from AT1G64620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676773628
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0848982e-97AY084898.1 Arabidopsis thaliana clone 120488 mRNA, complete sequence.
GenBankBT0040472e-97BT004047.1 Arabidopsis thaliana clone RAFL14-91-B14 (R20433) putative Dof zinc finger protein (At1g64620) mRNA, complete cds.
GenBankBT0051482e-97BT005148.1 Arabidopsis thaliana clone U20433 putative Dof zinc finger protein (At1g64620) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010430605.11e-163PREDICTED: dof zinc finger protein DOF1.8 isoform X1
SwissprotQ84JQ81e-163DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBLA0A178W2N81e-162A0A178W2N8_ARATH; Uncharacterized protein
STRINGBostr.29223s0015.1.p1e-165(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149321720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.11e-149Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]