PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676773628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | Dof | ||||||||
Protein Properties | Length: 373aa MW: 40054.8 Da PI: 7.9314 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.3e-39 | 44 | 105 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC+s ntkfCyynnysl+qPryfCk CrryWt+GG+lrn+P+Ggg rknk+sss 676773628 44 KDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTEGGSLRNIPIGGGIRKNKRSSS 105 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-31 | 29 | 96 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.7E-33 | 45 | 102 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.612 | 48 | 102 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 50 | 86 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MDTAKWPQEF VVKPMNEIVT NTCSKQTSPS GAAPAVERKA RPEKDQALNC PRCNSLNTKF 60 CYYNNYSLTQ PRYFCKDCRR YWTEGGSLRN IPIGGGIRKN KRSSSSSSSS NSNSSSSPSS 120 SSSSKKTLFV NNNSQKPTPL QQLNPKTGEN AHEAAAKVQE LAFSQSQGFG NAHEVKDLNL 180 AFSQGFGIGH HHQQQQHQHH HSIPEFLQVV PSSMKNNPLV STSSALELLG ISNSSSSNPR 240 PAFMPYPNVQ DSSVYTAAAA SDFGLSYPQF QEFMRPALGF SLDGGYGGDP LHQEDGSSGT 300 NNGRPLLPFE SLKLPVSSSS TNSGGGNGNV DGNDHHHNDH KHGKEDGEAD QSVGFWNGML 360 SAGASAASGG GSW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00210 | DAP | Transfer from AT1G64620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676773628 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY084898 | 2e-97 | AY084898.1 Arabidopsis thaliana clone 120488 mRNA, complete sequence. | |||
GenBank | BT004047 | 2e-97 | BT004047.1 Arabidopsis thaliana clone RAFL14-91-B14 (R20433) putative Dof zinc finger protein (At1g64620) mRNA, complete cds. | |||
GenBank | BT005148 | 2e-97 | BT005148.1 Arabidopsis thaliana clone U20433 putative Dof zinc finger protein (At1g64620) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010430605.1 | 1e-163 | PREDICTED: dof zinc finger protein DOF1.8 isoform X1 | ||||
Swissprot | Q84JQ8 | 1e-163 | DOF18_ARATH; Dof zinc finger protein DOF1.8 | ||||
TrEMBL | A0A178W2N8 | 1e-162 | A0A178W2N8_ARATH; Uncharacterized protein | ||||
STRING | Bostr.29223s0015.1.p | 1e-165 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14932 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64620.1 | 1e-149 | Dof family protein |
Publications ? help Back to Top | |||
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