PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676773530
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 503aa    MW: 57217.6 Da    PI: 9.4326
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676773530genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.4e-14297343148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++ WT eEd +l   v+++G++ Wk Ia+++g +  +kqc++rw+++l
        676773530 297 KKEWTSEEDRILRTFVELHGTKKWKVIANRLG-KTEGKQCRERWLNHL 343
                      679*****************************.899**********97 PP
2Myb_DNA-binding41.82.5e-13349391145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +g W++ Ed+++v+ +k  G++ Wk I+ ++  gR+++++k+rw+
        676773530 349 KGDWSEKEDQIFVETHKVCGNK-WKMISLKLH-GRSENEIKNRWN 391
                      789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575135No hitNo description
PROSITE profilePS5129422.489292347IPR017930Myb domain
SuperFamilySSF466891.34E-24295390IPR009057Homeodomain-like
SMARTSM007173.2E-14296345IPR001005SANT/Myb domain
CDDcd001671.94E-12299343No hitNo description
Gene3DG3DSA:1.10.10.602.3E-22299350IPR009057Homeodomain-like
PfamPF139211.1E-16300358No hitNo description
SMARTSM007177.3E-11348396IPR001005SANT/Myb domain
PROSITE profilePS5129417.595348398IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-18351396IPR009057Homeodomain-like
CDDcd001675.22E-8352391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MIEKEENGHA RHCFLERKYA LRCLAMISSG SAGGCSKILD WASGSAQGID KRDGRFGLAL  60
GDASKPSGLA KRVRPKGRRS WPSRSPDRAS FCPARHQGEE QHGRAGHSFA LILIRLGILH  120
HPMEHCFVKK RLWYEKFGLS QFIGKSYEKR VFVYFSKSYR WSSPSLMTGI FNHNHQTPIP  180
LMPTQNYDPF NQSFVPTQNA LIYNSPITEI PSKASLFKES INNLTNSNKD HLRYNSPIPI  240
EPNGVFDISH DFHGNTIHNK RSTTNGNDSI LDNSVVESNP VNLPVSEVKS TKGKIKKKEW  300
TSEEDRILRT FVELHGTKKW KVIANRLGKT EGKQCRERWL NHLRPDIKKG DWSEKEDQIF  360
VETHKVCGNK WKMISLKLHG RSENEIKNRW NAAKRRVHSI KAKQGHKTAN SYHGDILENY  420
VKSNNDLPKA NEIANIEDGN EDVLDGEINS SMDVTAHTKD PLANASTISG YVPEPATFSC  480
DYYDITELFE CMEDTQMLIQ GWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2630039610106B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMap676773530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133031427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.14e-61myb domain protein 115