PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676771790
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 391aa    MW: 44477.1 Da    PI: 4.6434
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676771790genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind93.13.2e-29221252102
                   HHHHHHHHHCTGGGTTTSEESSSS.SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX..TTSEEEEESXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkeliswseng.nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk..ekiweFkhksFkkgkkelle 95 
                   Fl+k ye+++d++++++isws+ng nsf++ld+  f++++LpkyFkhsn++SF+RQLn+Y   ++++e     +k   + weF+++ F kg+kell+
     676771790  22 FLRKCYEMVDDSSTDSIISWSSNGdNSFLILDTAVFSSQLLPKYFKHSNLSSFIRQLNIYVRLSLSSEPMIGFRKvdADRWEFANDGFVKGRKELLK 118
                   9********************77769**********************************88777777765555345999***************** PP

                   XXXXXXX CS
  HSF_DNA-bind  96 kikrkks 102
                   ++ r+k+
     676771790 119 NVIRRKN 125
                   *999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-3113118IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.44E-2817123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.8E-4718123IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2522123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-142245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-146173IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-147486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MVKSSDAVES SPSSSSSSVA PFLRKCYEMV DDSSTDSIIS WSSNGDNSFL ILDTAVFSSQ  60
LLPKYFKHSN LSSFIRQLNI YVRLSLSSEP MIGFRKVDAD RWEFANDGFV KGRKELLKNV  120
IRRKNVQSSE HQNKSVYNKR ESVNDDASQE KAERSDLWKE VDILKGDKNA LAQELVKVRQ  180
YQEVTDTKML HLKDRVQGME ESQQEMLSFL VMVMQNPSLL VQLLQPKENS WRKAEGATIL  240
EDVTDEGEAN PSGLPLVTYQ PPVDGTTKSS SNEINDFLRN ADMLKFCLDE NHVPLIIPDL  300
YDDGAWEKLL LLSPSKKKTK KMQEKNVKKG NDDAALEEED GAMELDKSRM LELIEEEMER  360
PDEFDFGQLS PERSRNLEIL TQQMGLLASK E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-211312320129Heat shock factor protein 1
5d5v_B1e-211312320129Heat shock factor protein 1
5d5v_D1e-211312320129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMap676771790
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887161.10.0heat stress transcription factor A-8
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLD7KW840.0D7KW84_ARALL; Predicted protein
STRINGBostr.26959s0105.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-169heat shock transcription factor A8