PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676770646 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | Trihelix | ||||||||
Protein Properties | Length: 239aa MW: 27276.4 Da PI: 8.8072 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 58.8 | 1.4e-18 | 19 | 106 | 2 | 73 |
trihelix 2 WtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e+++Liea++ ++er r++ ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r + 676770646 19 WTLNETMVLIEAKKMDDERRMRRSiglpaseqsqsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 106 *************977776666544555556666666666999*****************************************9843 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.853 | 11 | 91 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.2E-13 | 18 | 106 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPASEQ SQSSSGNKPA 60 ELRWKWIEDY CWRKGCMRSQ NQCNDKWDNL MRDYKKVREY ERRRVESSFA SESSSSAAAE 120 TGSYWKMEKS ERKERNLPRG GGGGNVETEE GETVVAAALS RSASVIANAI RESEERQDRR 180 HQEVMSLQER RLKIEESNVE MNREGMNGLV EAINKLASSI FALASSSSRH NNQHQGGPS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676770646 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189444 | 1e-152 | AC189444.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070J23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489614.1 | 1e-81 | PREDICTED: protein SCARECROW-like isoform X1 | ||||
Refseq | XP_018489615.1 | 8e-82 | PREDICTED: protein SCARECROW-like isoform X2 | ||||
TrEMBL | A0A087HS01 | 2e-83 | A0A087HS01_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HS01 | 3e-84 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3493 | 26 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31310.1 | 3e-58 | Trihelix family protein |