PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676770552
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 288aa    MW: 32166.6 Da    PI: 9.4447
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676770552genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.62e-0757110154
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +++  n++Er RR r+  ++ +L +llP  s+ ++kK    +i  ++v YI +L
  676770552  57 KKQERNANERLRRMRLHASYLTLGTLLPDHSSSSKKKWCAPSIMDRVVTYIPKL 110
                67889************************87888889**************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-950122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.31856110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-756115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-457115No hitNo description
SMARTSM003532.9E-462116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSDHQTFASS LLDDLLHIPA ETIGEKNDTC PAQSEGKGKE VVVLHDQDAH GSSGTAKKQE  60
RNANERLRRM RLHASYLTLG TLLPDHSSSS KKKWCAPSIM DRVVTYIPKL HNEVEELTLR  120
KQNLVEAINS KRSRELERHD QSRIRAISVL EVGGLDDEAV VQISMKKEKE DEFSNLLHVM  180
EMQGSSILNA SISLVCRDQR VVCYSFHVKK EGKRKTLGLS LRGPEYHGPA LHFLNGLGPG  240
CDKTNRNIQH AFSHIFVKGT IKKARKCFTV EARTKGLTTS ASNHHTSG
Cis-element ? help Back to Top
SourceLink
PlantRegMap676770552
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161626e-32AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0169726e-32AC016972.7 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete sequence.
GenBankCP0026846e-32CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464640.11e-116PREDICTED: uncharacterized protein LOC108835920
SwissprotF4I8F97e-75BH160_ARATH; Transcription factor bHLH160
TrEMBLA0A3N6QF871e-117A0A3N6QF87_BRACR; Uncharacterized protein
STRINGBra007968.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105582234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.13e-77bHLH family protein
Publications ? help Back to Top
  1. Yan J, et al.
    Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis.
    Plant Cell, 2017. 29(12): p. 3012-3029
    [PMID:29114014]