PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676769310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 695aa MW: 77250.7 Da PI: 6.7813 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.4e-19 | 57 | 110 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k +++t++q++eLe++F+ +++p++++r eL +kl+L+ +q+k+WFqNrR+++k 676769310 57 KYRRHTSYQIQELESFFKVCPHPNEKQRLELGSKLSLESKQIKFWFQNRRTQMK 110 56789**********************************************999 PP | |||||||
2 | START | 177.9 | 5.9e-56 | 229 | 445 | 6 | 206 |
HHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......E CS START 6 aaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg......g 89 a++el+k+a++++p+W s es n +e++++f+ sk + e +r++g+v ++ +lve+l+d++ +W e+++ a+t+evis+g g 676769310 229 AMDELIKLAELDHPLWINCSksdkESMNHEEYRSIFAGSKHpgSAAEGSRETGLVLINSLTLVETLMDTN-RWAEMFErvvaVASTVEVISNGsggsrsG 327 799***************999999999*********999888999999**********************.*******99999***************** PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHH CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksg 188 lqlm+ae+q++splvp R + f+Ry++q+g+g w++vdvS d +++ + +s+ ++lpSg++i++ +ng skvtw+eh +++g+++h l+++l++s+ 676769310 328 SLQLMQAEFQVMSPLVPiRQVKFLRYCKQHGDGLWAVVDVSYDTNREDDNLKSYGGLKRLPSGCIIQDIGNGCSKVTWIEHSEYEGSQIHPLYQQLLGSS 427 ******************************************9999999999************************************************ PP HHHHHHHHHHHTXXXXXX CS START 189 laegaktwvatlqrqcek 206 + ga +w+atlqrqce+ 676769310 428 VGLGATKWLATLQRQCES 445 ****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-18 | 39 | 112 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.34E-17 | 48 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.358 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-15 | 54 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.97E-15 | 57 | 112 | No hit | No description |
Pfam | PF00046 | 1.6E-16 | 57 | 110 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 44.451 | 215 | 448 | IPR002913 | START domain |
CDD | cd08875 | 6.02E-98 | 220 | 444 | No hit | No description |
SuperFamily | SSF55961 | 8.65E-30 | 223 | 446 | No hit | No description |
SMART | SM00234 | 3.9E-39 | 224 | 445 | IPR002913 | START domain |
Pfam | PF01852 | 9.3E-50 | 229 | 445 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.3E-19 | 470 | 688 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MNGDLDMSRE DINSSYPGRF GDDEFDESDS FEAMCSHDDK QEQHPKKKRK NNKKMTKYRR 60 HTSYQIQELE SFFKVCPHPN EKQRLELGSK LSLESKQIKF WFQNRRTQMK TQLERHENVI 120 LREENEKLRI ENGILKEAMK SPICNNCGGA APPVEVSYEQ QQLRIENAKL KHELDKLCAL 180 ANRFIGGSIS LDQPSNGGIG SQDLSVGHGF IRGTLISESS MCMDRAMVAM DELIKLAELD 240 HPLWINCSKS DKESMNHEEY RSIFAGSKHP GSAAEGSRET GLVLINSLTL VETLMDTNRW 300 AEMFERVVAV ASTVEVISNG SGGSRSGSLQ LMQAEFQVMS PLVPIRQVKF LRYCKQHGDG 360 LWAVVDVSYD TNREDDNLKS YGGLKRLPSG CIIQDIGNGC SKVTWIEHSE YEGSQIHPLY 420 QQLLGSSVGL GATKWLATLQ RQCESYTTLL SSQDQTGLSL SGTKSTLTLA QRMKRNFYSG 480 ITASHIHKWE KLLAENVGQD TRILTRKSLQ PSGVVLSAAT SMWLPVTQQR LFEFLCDSKC 540 RNQWDILSNG ASMETMLLIP KGQHEGTCVS LLQPAGKHQN ESSMLILQET WNDASGALVV 600 YAPVDVPSMN IVMNGGDSAN VALLPSGFSI LPDGSSSSSS WSDQIESRGC LLTVGFQILV 660 NSVPTAKLNM ESVQTVNNLI ACTIHKIKAA LRIPA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 44 | 59 | PKKKRKNNKKMTKYRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269|PubMed:16778018}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00559 | DAP | Transfer from AT5G52170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676769310 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009106897.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG7 | ||||
Swissprot | Q9LTK3 | 0.0 | HDG7_ARATH; Homeobox-leucine zipper protein HDG7 | ||||
TrEMBL | A0A3P6CY22 | 0.0 | A0A3P6CY22_BRACM; Uncharacterized protein | ||||
STRING | Bra028295.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1128 | 27 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52170.1 | 0.0 | homeodomain GLABROUS 7 |
Publications ? help Back to Top | |||
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