PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676769024

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Nin-like

Protein Properties

Length: 821aa MW: 91563 Da PI: 7.1722

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676769024	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.3e-29	547	597	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ 676769024 547 EKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 597 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.45	536	617	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-26	549	597	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.6E-20	708	806	No hit	No description
SMART	SM00666	3.9E-23	716	803	IPR000270	PB1 domain
PROSITE profile	PS51745	20.071	716	803	IPR000270	PB1 domain
CDD	cd06407	1.14E-32	717	802	No hit	No description
Pfam	PF00564	5.1E-19	717	802	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.5E-24	717	803	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 821 aa Download sequence Send to blast
MELDDLDLGG SWPLDQITFA SNFRFEQPFS PLWSFSEAAT VSGDGAAELS PTRFTDYSLL 60 LTSSESEASK ENHHVVPCPL FGIMPLENNP DTYCAIKAKM TQALRYFKES SGQQHLLAQV 120 WAPVKNRGRY VLTTSGQPFV LGPNSNGLHQ YRMVSLTYMF SVDGERDGEL GLPGRVFRKK 180 LPEWTPNVQY YSSKEFSRLG HALHYNVQGT LALPVFEPSR QLCVGVVELI MTSPKINYAP 240 EVEKVCKALE AVNLKTSEIL NHESTQICNE GRQNALAEIL EILTVVCETY KLPLAQTWVP 300 CRHRSVLAFG GGFKKSCSSF DGSCMGKVCM STSDLAVYVV DAHVWGFRDA CAEHHLQKGQ 360 GVAGRAFVSG NLCFSRDVTR FCKTDYPLVH YARMFKLTSC FAVCLKSTYT GDDEYVLEFF 420 LPPAITGKGE QDSLLGSLFQ TMKQHYSSLK VVSGTELCEN EMSIEVVEAS EDGMVYSKLE 480 PIQLHHPAAP ISKDYLQLNA PEQKLCLNSD IMENNEVADV FERFQTVNPS PEAKTEKKTE 540 RKRGKTEKTI SLEVLQQYFA GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS 600 LTRLKHVIDS VQGADGSINL TSLSSRPWSH QVSPIENQPT PATRSPTNYL QDIKLESRDA 660 EDSAGSSTSR ASCKGNKKSF HHHHHHFHGL QKSQHPSVIC LVFHKAPSPT TLHNKLVSIK 720 ATYREDIIRF KISPDSISIT ELKQQVAKRL KLETAAFELK YLDDDKEWVS VSCDADLSEC 780 LETSTTFAPV AKANTLRLSV HDVTPNFGSS CESSEETMMS L

Sequence ? help Back to Top

Protein Sequence Length: 821 aa Download sequence Send to blast

MELDDLDLGG SWPLDQITFA SNFRFEQPFS PLWSFSEAAT VSGDGAAELS PTRFTDYSLL  60
LTSSESEASK ENHHVVPCPL FGIMPLENNP DTYCAIKAKM TQALRYFKES SGQQHLLAQV  120
WAPVKNRGRY VLTTSGQPFV LGPNSNGLHQ YRMVSLTYMF SVDGERDGEL GLPGRVFRKK  180
LPEWTPNVQY YSSKEFSRLG HALHYNVQGT LALPVFEPSR QLCVGVVELI MTSPKINYAP  240
EVEKVCKALE AVNLKTSEIL NHESTQICNE GRQNALAEIL EILTVVCETY KLPLAQTWVP  300
CRHRSVLAFG GGFKKSCSSF DGSCMGKVCM STSDLAVYVV DAHVWGFRDA CAEHHLQKGQ  360
GVAGRAFVSG NLCFSRDVTR FCKTDYPLVH YARMFKLTSC FAVCLKSTYT GDDEYVLEFF  420
LPPAITGKGE QDSLLGSLFQ TMKQHYSSLK VVSGTELCEN EMSIEVVEAS EDGMVYSKLE  480
PIQLHHPAAP ISKDYLQLNA PEQKLCLNSD IMENNEVADV FERFQTVNPS PEAKTEKKTE  540
RKRGKTEKTI SLEVLQQYFA GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS  600
LTRLKHVIDS VQGADGSINL TSLSSRPWSH QVSPIENQPT PATRSPTNYL QDIKLESRDA  660
EDSAGSSTSR ASCKGNKKSF HHHHHHFHGL QKSQHPSVIC LVFHKAPSPT TLHNKLVSIK  720
ATYREDIIRF KISPDSISIT ELKQQVAKRL KLETAAFELK YLDDDKEWVS VSCDADLSEC  780
LETSTTFAPV AKANTLRLSV HDVTPNFGSS CESSEETMMS L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676769024

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391609.1	0.0	protein NLP6
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	V4JU57	0.0	V4JU57_EUTSA; Uncharacterized protein
STRING	XP_006391609.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]