PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676768160

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GeBP

Protein Properties

Length: 1041aa MW: 116270 Da PI: 6.0942

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676768160	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	119.9	1.3e-37	470	559	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 +fqrlw+eeDei++LqG+idfk++tg sp+dd++ y+++kk isf+vsk+q+++Kir+LKkK+ +k+k sf+k+hdqk++ l+k iWgs 676768160 470 AFQRLWTEEDEITVLQGMIDFKKDTGNSPYDDTNVYYDYIKKDISFEVSKNQFMDKIRSLKKKYMGKEKP-------SFTKPHDQKSYRLCKYIWGS 559 69************************************************************998776.......****************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57889	1.88E-5	61	113	No hit	No description
Pfam	PF03107	3.4E-7	61	108	IPR004146	DC1
Pfam	PF07649	3.3E-11	165	192	IPR011424	C1-like
SuperFamily	SSF57889	9.63E-20	173	263	No hit	No description
Pfam	PF03107	9.7E-12	202	250	IPR004146	DC1
Pfam	PF04504	1.3E-29	471	558	IPR007592	Protein of unknown function DUF573
SuperFamily	SSF51735	6.12E-56	708	1030	IPR016040	NAD(P)-binding domain
Gene3D	G3DSA:3.40.50.720	9.3E-54	709	1027	IPR016040	NAD(P)-binding domain
CDD	cd08958	2.27E-126	712	1013	No hit	No description
Pfam	PF01370	3.0E-24	712	957	IPR001509	NAD-dependent epimerase/dehydratase, N-terminal domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009964	Biological Process	negative regulation of flavonoid biosynthetic process
GO:0043473	Biological Process	pigmentation
GO:0055114	Biological Process	oxidation-reduction process
GO:0033729	Molecular Function	anthocyanidin reductase activity
GO:0047134	Molecular Function	protein-disulfide reductase activity
GO:0050662	Molecular Function	coenzyme binding

Sequence ? help Back to Top
Protein Sequence Length: 1041 aa Download sequence Send to blast
MGYDGGFHEV EKDGKIFLVY HHPKYHPIQT SSGEEARDDH SSQLIFLCPD ARQAKDAMIS 60 RHHHHISYTY SLKSGEWYCG VCRKSIDNDN GAYICHRCSN YAVHSRCALG KDVWDGKELE 120 GIQEEDIAQD IGPFKMISEG VILHYLHDHH LQLKDTMLYD ENKICQACTL PIYEGIFYSC 180 MECGFILHGT CAYVPRKIQH ALHPHPLTLK TDTGSSNDYF ICNACGRASV GFVYKCSITR 240 CIFYLDLRCA SISEPFDYQN HKHPLYLALN PKEKPICQEL YMKPGGKYYT SEGNEVQILG 300 KSNLSRPFCQ YCKNRCQRKN PPAASSSDDD EVESSVGEEE EEEEEDDDND VASSSEEEPT 360 KPPSSSVVTI AVPGNKPTLP SAQQQAGGSD SGSGSETETD SESETERPLN QGSGKSITKK 420 DNNNKAPPPA ALPLTKSGTK RPSEAPAASS SKRVKKDEEK KVGEDSKKPA FQRLWTEEDE 480 ITVLQGMIDF KKDTGNSPYD DTNVYYDYIK KDISFEVSKN QFMDKIRSLK KKYMGKEKPS 540 FTKPHDQKSY RLCKYIWGSD GLGLDSAVKS NGGMSKKKSQ KTKKLDSVKQ ELSFVSSPNG 600 KTDDDKRVLL AGGGGDAEPV LVSKKCDWFD NSFLVKAIAG FGIDERFVKQ RWSLVPVETK 660 KKVEEKLKVL QAKEIEFALE KTEVLHEVTS MIAEQMAITD QIAGITGTKK ACVIGGTGNL 720 ASILIKHLLQ SGYKVNTTVR DPENEKKMSH LKVLQELGDL NIFKADLADE ESFGSPFSGC 780 EYIFHVATPI NFTSEDPEKD MIRPAIQGVI NVLKSCLKSK SVKRVIYTSS AAAVSINDLS 840 GPGLVMNEEN WTDVDFLTKE KPFNWGYPIS KMLAEKAAWK FAEENKIDLV TVIPALIAGN 900 SLLSEPPPSS LSLSMSLITG KEMHLIGLKE MQKLSGSISF VHVDDLARAH LFLAEKETAS 960 GRYICCSYNT NVPEIADFLR QRYPKYNVLS EFEECLSSAK LTLSSEKLTN EGFRFEYGIN 1020 EMYDEMMEYF ESKGLIKAKE S

Sequence ? help Back to Top

Protein Sequence Length: 1041 aa Download sequence Send to blast

MGYDGGFHEV EKDGKIFLVY HHPKYHPIQT SSGEEARDDH SSQLIFLCPD ARQAKDAMIS  60
RHHHHISYTY SLKSGEWYCG VCRKSIDNDN GAYICHRCSN YAVHSRCALG KDVWDGKELE  120
GIQEEDIAQD IGPFKMISEG VILHYLHDHH LQLKDTMLYD ENKICQACTL PIYEGIFYSC  180
MECGFILHGT CAYVPRKIQH ALHPHPLTLK TDTGSSNDYF ICNACGRASV GFVYKCSITR  240
CIFYLDLRCA SISEPFDYQN HKHPLYLALN PKEKPICQEL YMKPGGKYYT SEGNEVQILG  300
KSNLSRPFCQ YCKNRCQRKN PPAASSSDDD EVESSVGEEE EEEEEDDDND VASSSEEEPT  360
KPPSSSVVTI AVPGNKPTLP SAQQQAGGSD SGSGSETETD SESETERPLN QGSGKSITKK  420
DNNNKAPPPA ALPLTKSGTK RPSEAPAASS SKRVKKDEEK KVGEDSKKPA FQRLWTEEDE  480
ITVLQGMIDF KKDTGNSPYD DTNVYYDYIK KDISFEVSKN QFMDKIRSLK KKYMGKEKPS  540
FTKPHDQKSY RLCKYIWGSD GLGLDSAVKS NGGMSKKKSQ KTKKLDSVKQ ELSFVSSPNG  600
KTDDDKRVLL AGGGGDAEPV LVSKKCDWFD NSFLVKAIAG FGIDERFVKQ RWSLVPVETK  660
KKVEEKLKVL QAKEIEFALE KTEVLHEVTS MIAEQMAITD QIAGITGTKK ACVIGGTGNL  720
ASILIKHLLQ SGYKVNTTVR DPENEKKMSH LKVLQELGDL NIFKADLADE ESFGSPFSGC  780
EYIFHVATPI NFTSEDPEKD MIRPAIQGVI NVLKSCLKSK SVKRVIYTSS AAAVSINDLS  840
GPGLVMNEEN WTDVDFLTKE KPFNWGYPIS KMLAEKAAWK FAEENKIDLV TVIPALIAGN  900
SLLSEPPPSS LSLSMSLITG KEMHLIGLKE MQKLSGSISF VHVDDLARAH LFLAEKETAS  960
GRYICCSYNT NVPEIADFLR QRYPKYNVLS EFEECLSSAK LTLSSEKLTN EGFRFEYGIN  1020
EMYDEMMEYF ESKGLIKAKE S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2rh8_A	1e-154	707	1037	8	337	Anthocyanidin reductase
3hfs_A	1e-154	707	1037	8	337	Anthocyanidin reductase
3hfs_B	1e-154	707	1037	8	337	Anthocyanidin reductase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676768160

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF092912	0.0	AF092912.1 Arabidopsis thaliana DFR-like protein (BAN) mRNA, complete cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	1e-68	DNA-binding storekeeper protein-related transcriptional regulator