PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676767842 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | NF-YC | ||||||||
Protein Properties | Length: 234aa MW: 26618.7 Da PI: 7.1138 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 137 | 5.4e-43 | 56 | 156 | 2 | 98 |
NF-YC 2 lksfwekqiekatdfk....nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 lk+fw +q ++ +f +++lPl+r++kilk+d++v+mis +aP+l+skace+fileltlr+w+h+++++r+t++++d+++av++++++ fl+d vp 676767842 56 LKVFWDNQWDELRNFTgfnrQNNLPLTRVRKILKSDPQVRMISWDAPALVSKACEYFILELTLRAWMHTQSCTRQTIRRCDVFQAVKNSETYGFLIDLVP 155 89******888877754435789****************************************************************************9 PP NF-YC 98 r 98 676767842 156 F 156 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.02E-23 | 76 | 156 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.0E-15 | 78 | 141 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.3E-27 | 79 | 155 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MKRPIVTSSS LFPNASVKSS RIRMEPVALE SHTVMLMPYN PAMNNIDAVS SLEAVLKVFW 60 DNQWDELRNF TGFNRQNNLP LTRVRKILKS DPQVRMISWD APALVSKACE YFILELTLRA 120 WMHTQSCTRQ TIRRCDVFQA VKNSETYGFL IDLVPFGPHC AIHQGVLEHA EPDKVLTPAK 180 MILPDMNVPI DLNQIEQENV IAKPFINRKG FDLNSISSEH DSDGNQGIVE KVQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-25 | 62 | 155 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676767842 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405799.2 | 1e-123 | nuclear transcription factor Y subunit C-10 isoform X2 | ||||
Swissprot | Q58CM8 | 3e-83 | NFYCA_ARATH; Nuclear transcription factor Y subunit C-10 | ||||
TrEMBL | V4LXI0 | 1e-117 | V4LXI0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405799.1 | 1e-117 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16422 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38140.1 | 1e-85 | nuclear factor Y, subunit C12 |
Publications ? help Back to Top | |||
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