PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676767668 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | GeBP | ||||||||
Protein Properties | Length: 309aa MW: 34815.6 Da PI: 10.3333 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 72.5 | 7.9e-23 | 63 | 151 | 3 | 98 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvk.ksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 ++r+w +eDe+++L Gl+d++aktg++p+ ++d+f++f+ +si +k+sk+ql++Kir+LK Kf +++ +g++ + +++f lskkiWg+ 676767668 63 INRIW-DEDELTVLNGLVDYQAKTGVEPKTNWDEFHRFLGgGSIAAKFSKDQLLSKIRKLKGKFLVRMQS--QGNDHIL-----SEAFRLSKKIWGQ 151 67999.68******************************96369*************************99..8888555.....468********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.2E-16 | 64 | 150 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MVSLRHLDLS DDSSPSSQSL LPTKSPRKHT SKPPPPSKPV PEQVTKKNKN KKKKNKKLAS 60 SVINRIWDED ELTVLNGLVD YQAKTGVEPK TNWDEFHRFL GGGSIAAKFS KDQLLSKIRK 120 LKGKFLVRMQ SQGNDHILSE AFRLSKKIWG QNDSNHSKTG DQLLSKIRKL KGKFLVRMQS 180 QGNDHILSEA FRLSKKIWGQ NDSNHSKTGE EEEAANHEPL SDNVVAKRDF EGNDDADKSC 240 ALTDAFETMV SPGLSDYQKK SQLQKLMNLG SGKRKELSDE WKELCAEEVK LNIKKFRFSA 300 MLAEAANGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676767668 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590206.1 | 1e-85 | PREDICTED: uncharacterized protein LOC106298614 | ||||
TrEMBL | A0A0D3CT54 | 1e-84 | A0A0D3CT54_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g064770.1 | 2e-85 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6117 | 17 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00270.1 | 2e-57 | DNA-binding storekeeper protein-related transcriptional regulator |