PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676767434
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 836aa    MW: 91749.4 Da    PI: 6.1548
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676767434genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.4e-172583357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le+++ ++++p+  +r++L + +    +++ +q+kvWFqNrR ++k+
  676767434 25 KYVRYTAEQVEALERVYSECPKPTSLRRQQLIRDCpilaHIEPKQIKVWFQNRRCRDKQ 83
               56789***************************************************996 PP
2START161.46.6e-511603652202
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+ ++g a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l +++++
  676767434 160 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQRCNGVAARACGLVSLEPM-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELVYMQTY 258
                68999*****************************************************.7777777777***********999999999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h++l+g++++ +lr+l++s+ + ++k+
  676767434 259 APTTLAPaRDFWTLRYTTSLENGSFVVCERSLSGSGAGPNassAAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHINLEGWSVPDVLRPLYESSKVVAQKM 358
                *********************************9999998888899****************************************************** PP

                HHHHTXX CS
      START 196 wvatlqr 202
                + a+l++
  676767434 359 TIAALRY 365
                ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.8522084IPR001356Homeobox domain
SMARTSM003893.6E-142288IPR001356Homeobox domain
SuperFamilySSF466891.33E-152287IPR009057Homeodomain-like
CDDcd000863.04E-142585No hitNo description
PfamPF000467.4E-152683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-172780IPR009057Homeodomain-like
CDDcd146863.22E-677116No hitNo description
Gene3DG3DSA:1.20.5.1705.4E-481129No hitNo description
PROSITE profilePS5084827.715150378IPR002913START domain
CDDcd088753.57E-70154368No hitNo description
Gene3DG3DSA:3.30.530.201.6E-20158363IPR023393START-like domain
SMARTSM002341.0E-41159369IPR002913START domain
SuperFamilySSF559613.43E-35160370No hitNo description
PfamPF018521.2E-48160366IPR002913START domain
PfamPF086709.1E-49688835IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MAMAVANHHE SGGDNINRHL DSSGKYVRYT AEQVEALERV YSECPKPTSL RRQQLIRDCP  60
ILAHIEPKQI KVWFQNRRCR DKQRKEASRL QSVNRKLSAM NKLLMEENDR LQKQVSHLVS  120
ENGYMKQQLT TGTDASCDSV DPSPHHSLRD ANSPAGLLAI AEETLAEFLS KATGTAVDWV  180
QMPGMKPGPD SVGIFAISQR CNGVAARACG LVSLEPMKIA EILKDRPSWF RDCRSLEVFT  240
MFPAGNGGTI ELVYMQTYAP TTLAPARDFW TLRYTTSLEN GSFVVCERSL SGSGAGPNAS  300
SAAQFVRAEM LPSGYLIRPC DGGGSIIHIV DHINLEGWSV PDVLRPLYES SKVVAQKMTI  360
AALRYIRQVA HETNGEVVYG LGRQPAVLRT FSQRLSRGFN DAVNGFNDDG WSIMHCNGAE  420
DIIVAVNSTK HLNSISDSLS FLGGVLCAKA SMLLQNVPPA VLIRFLREHR SEWADFNVDA  480
YSAATLKAGA FAYPGMRPTR FTGSQIIMPL GHTIENEEML EVVRLEGHSL VQEDAFSSRD  540
VHLLQICTGI NEDAVGACSE LVFAPVNEMF PDDAPLVPSG FRVIPVDAKT GDAQALLTAN  600
HRTLDLTSSL DVSSAPENGS NPSSRCILTI AFQFPFENNL QENVANMACQ YVRSVISSVQ  660
RVAMAISPSG LNPVSGSKLS PGSPEAITLA LWICQSYNRH LGSDLLRTDS LGGDSLLRQL  720
WDHQDAILCC SLKPQPVFMF ANQAGLDMLE TTLVALQDIT LEKIFDESGR KALCPDFAKL  780
MQQGFACLPS GMCVSTMGRH VSYEQAVSWK VFADSEDNNN NSIHCLAFLF VNWSFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676767434
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150087.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like isoform X1
RefseqXP_013642495.10.0homeobox-leucine zipper protein REVOLUTA-like isoform X1
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A3P5Z0W90.0A0A3P5Z0W9_BRACM; Uncharacterized protein
STRINGBra038295.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]