PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676766702
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 154aa    MW: 17196.8 Da    PI: 9.7092
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676766702genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-1492142155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +++kGVr ++ +g+W AeI+dps    r kr +lg f t e+Aa a+++a+ +l g
  676766702  92 KKHKGVRKKP-SGKWSAEIWDPSL---RlKR-WLGMFPTMEMAAHAYDEAAAELVG 142
                589****999.7*********954...4455.*******************99977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.8293154IPR001471AP2/ERF domain
SMARTSM003801.5E-1893154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1893143IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-1493144IPR016177DNA-binding domain
PfamPF008473.1E-893142IPR001471AP2/ERF domain
CDDcd000187.22E-1296128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDYSKNAPSD NQNEDLFSPS PPPYLTRDQE HGIMVSALRH VICNTRGYTP ISNLISENAL  60
PPLDAGPCPL CGVIGCYGCT FQRGRKEIKK EKKHKGVRKK PSGKWSAEIW DPSLRLKRWL  120
GMFPTMEMAA HAYDEAAAEL VGRISARVAR RNGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
184100RKEIKKEKKHKGVRKKP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676766702
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444706.11e-65PREDICTED: ethylene-responsive transcription factor ERF122-like
SwissprotQ9FGC93e-56EF121_ARATH; Putative ethylene-responsive transcription factor ERF121
TrEMBLR0F0669e-61R0F066_9BRAS; Uncharacterized protein
STRINGXP_010444706.14e-65(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.16e-44ERF family protein