PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676766396
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Dof
Protein Properties Length: 105aa    MW: 11593.1 Da    PI: 9.6565
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676766396genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof104.65.6e-331471460
     zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
               ++tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvPvG+grrk+k 
  676766396  1 METKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKP 47
               69******************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088424.195147IPR003851Zinc finger, Dof-type
PfamPF027012.7E-26146IPR003851Zinc finger, Dof-type
ProDomPD0074789.0E-22146IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010214Biological Processseed coat development
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
METKFCYFNN YNVNQPRHFC KGCQRYWTAG GALRNVPVGA GRRKSKPPGR VGGFAELLGA  60
ATGAVDQGQL DALLVEEWRA AASHGGFRHD FPVKRLRCYT DGQSC
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation. Not involved in direct flowering time regulation. {ECO:0000269|PubMed:19619493}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00166DAPTransfer from AT1G29160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676766396
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By red or far-red light. Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210431e-121AC021043.4 Arabidopsis thaliana chromosome I BAC F28N24 genomic sequence, complete sequence.
GenBankBT0299901e-121BT029990.1 Arabidopsis thaliana At1g29160 mRNA, complete cds.
GenBankCP0026841e-121CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893549.15e-73dof zinc finger protein DOF1.5
SwissprotP683509e-73DOF15_ARATH; Dof zinc finger protein DOF1.5
TrEMBLA0A1J3HDQ59e-72A0A1J3HDQ5_NOCCA; Dof zinc finger protein DOF1.5 (Fragment)
STRINGscaffold_103229.12e-72(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28092669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.14e-75Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Bueso E, et al.
    Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration.
    Plant J., 2016. 87(6): p. 583-96
    [PMID:27227784]