PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676766244
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 550aa    MW: 62448.1 Da    PI: 7.4019
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676766244genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.81.2e-3347101155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kprl+Wtp+LHerF+eav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQkYRl
  676766244  47 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 101
                79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.22744104IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-3145102IPR009057Homeodomain-like
SuperFamilySSF466897.53E-1746102IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-2347102IPR006447Myb domain, plants
PfamPF002497.2E-1049100IPR001005SANT/Myb domain
PfamPF143798.8E-26148194IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
FMYYQNQHQG KNILSSSRMH LPSERHPFLR GGNSPGDSGL ILSTDAKPRL KWTPDLHERF  60
IEAVNQLGGA DKATPKTIMK VMGIPGLTLY HLKSHLQKYR LSKNLNGQAN SGLNKIGMMT  120
MMEEKSPDAD EIQSESLSIG PQPNKNSPIS EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ  180
GKYLQSVLEK AQETLGRQNL GPAGLEAAKV QLSELVSKVS AEYPNTSFLE PKEFQNLCPQ  240
QMQTTYPPDC SLESCLTSSE GAQKNPKMLE NNRLGLRTYL GDSTSEQKEI MEEPLFQRME  300
LTWTEGLRGN PYLSTMVSDA EQKISYSERS PARLSMGVGM HGHRGHQQGN NEYKDERFND  360
KSEDHKLESQ STKTELDLNT HVENYIERSM LLISPAEPSS LTAPPVQSTI STLKNSPALT  420
IRYTMNCFDW RVIQGDFVDF EIKDAFGVST YTPRLLSLKF KGMEMLILRD LNLERGTCFS  480
KVCMRKKLKL GKEKARGIED KDIVGCLAKG LECWTDFSKS HYHPQILYEL SGLWMDSQDF  540
KYLTFRLLPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-2047103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-2047103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-2047103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-2047103157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676766244
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2220890.0HQ222089.1 Arabidopsis thaliana myb family transcription factor (MYR2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018432890.10.0PREDICTED: myb-related protein 2 isoform X1
SwissprotQ9SQQ90.0PHL9_ARATH; Myb-related protein 2
TrEMBLA0A397ZFW90.0A0A397ZFW9_BRACM; Uncharacterized protein
TrEMBLM4ET220.0M4ET22_BRARP; Uncharacterized protein
STRINGBra031952.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33362764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.30.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]