PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676766192

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

BES1

Protein Properties

Length: 762aa MW: 83965.6 Da PI: 8.6717

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676766192	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	159.6	2.1e-49	2	74	1	73
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgs 73 ++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrk 676766192 2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEPDGTTYRKVR 74 5899******************************************************************965 PP
2	DUF822	35	5e-11	119	197	66	149
DUF822 66 Gttyrkgskpl.eeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsss 149 + +g++++ e++e++g sa+asp+ss+q +sp++sy++sp ss+f+sp+s+++++l+s +sl+p+l++ls++sss 676766192 119 DNLSGQGCSRPvERMEIGGGSATASPCSSYQ--------PSPCASYNPSPGSSNFMSPASSSFANLTSGdgQSLIPWLKHLSTTSSS 197 556678999999*****************........******************9999998788********997776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.9E-59	3	192	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Pfam	PF14416	3.1E-18	439	490	IPR025846	PMR5 N-terminal domain
Pfam	PF13839	3.7E-89	491	756	IPR026057	PC-Esterase

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence Send to blast
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG 60 WIVEPDGTTY RKVRSLPITF NVFTGLLTCS LRIFGKACGY FCFTVSSLYT RTSRVESNDN 120 LSGQGCSRPV ERMEIGGGSA TASPCSSYQP SPCASYNPSP GSSNFMSPAS SSFANLTSGD 180 GQSLIPWLKH LSTTSSSSAS SSSRLPNYLY IPGGSISAPV TPPLSSPTAR TPRMNPDWQQ 240 INNSFFVSST PPSPTRQTVP DSEWFSGIQL AQSVPASPTF SLVSQNPFGF KEEVASAGGG 300 GGGSRMWTPG QSGTCSPAIP PGADQTADVP MSEAVAPPEF AFGSNTNGLV KAWEGERIHE 360 ESGSDDLELT LGNSSTRRMW MTKVCTSVQH CNYHMEEETK LRSIHIQPYS HAYSNVLADK 420 ANANYNINNA TGYEEKISKC NIYEGSWIYD SSSSPLYGTS TCPFIGLDCQ KFGRPDKKYL 480 NYRWQPTGCD IPRFNGREFL TKFKGKKILF VGDSLSSNMW VSLSCMLHAA VPTAKYTFNL 540 EKLENKLSTF TIPEYGISVN FLKNGFLVDM VVNKAGGKIL KLDSISTGSQ WLGSDVVIFN 600 TFHWWSHTGR AKTWDYFQVG NQIVKEMDRM KAFRIALTTW SKWVDRNIDT AKTRVFYQGV 660 SPVHLNGNEW GKPGKTCSGE TEPLKGSRVK NEGEDIVRSV IGGMTKPVSL LDVTGMTELR 720 KDGHPSIYTG GGSSLNDCSH WCLPGVPDAW NQLLYTVLLR NV

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence Send to blast

MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG  60
WIVEPDGTTY RKVRSLPITF NVFTGLLTCS LRIFGKACGY FCFTVSSLYT RTSRVESNDN  120
LSGQGCSRPV ERMEIGGGSA TASPCSSYQP SPCASYNPSP GSSNFMSPAS SSFANLTSGD  180
GQSLIPWLKH LSTTSSSSAS SSSRLPNYLY IPGGSISAPV TPPLSSPTAR TPRMNPDWQQ  240
INNSFFVSST PPSPTRQTVP DSEWFSGIQL AQSVPASPTF SLVSQNPFGF KEEVASAGGG  300
GGGSRMWTPG QSGTCSPAIP PGADQTADVP MSEAVAPPEF AFGSNTNGLV KAWEGERIHE  360
ESGSDDLELT LGNSSTRRMW MTKVCTSVQH CNYHMEEETK LRSIHIQPYS HAYSNVLADK  420
ANANYNINNA TGYEEKISKC NIYEGSWIYD SSSSPLYGTS TCPFIGLDCQ KFGRPDKKYL  480
NYRWQPTGCD IPRFNGREFL TKFKGKKILF VGDSLSSNMW VSLSCMLHAA VPTAKYTFNL  540
EKLENKLSTF TIPEYGISVN FLKNGFLVDM VVNKAGGKIL KLDSISTGSQ WLGSDVVIFN  600
TFHWWSHTGR AKTWDYFQVG NQIVKEMDRM KAFRIALTTW SKWVDRNIDT AKTRVFYQGV  660
SPVHLNGNEW GKPGKTCSGE TEPLKGSRVK NEGEDIVRSV IGGMTKPVSL LDVTGMTELR  720
KDGHPSIYTG GGSSLNDCSH WCLPGVPDAW NQLLYTVLLR NV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6cci_A	7e-67	430	759	126	484	Protein ESKIMO 1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676766192

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F9K20	0.0	AC005679.1 Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-160	BES1/BZR1 homolog 4