PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676766152
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 177aa    MW: 19936.8 Da    PI: 6.5168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676766152genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.2e-0538781055
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               + R d++ ++++ L++l+ +      +K + a++L +A++YI  Lq
  676766152 38 KERKDKVGERISALQQLVSPY-----GKTDTASVLLEAMQYIEFLQ 78
               67889999***********99.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.7E-92787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.2612877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-123693IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-43683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-53882No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEYSRDSAGM MMENKRSVCS LEESSMKRHK SDLSFSSKER KDKVGERISA LQQLVSPYGK  60
TDTASVLLEA MQYIEFLQEQ VKVLSAPYLQ TTPIITRVSR ILTTFYHSKS VILDSTTSLD  120
CLCNQEELEE YSLRSRGLCL VPMEYTLGVA QTNGADIWAP VKTPTSPAFS LKTNYPI
Cis-element ? help Back to Top
SourceLink
PlantRegMap676766152
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5760416e-83AJ576041.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-beta gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410303.23e-92transcription factor bHLH153 isoform X2
SwissprotQ7XJU23e-83BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A078HCK63e-86A0A078HCK6_BRANA; BnaC04g12910D protein
TrEMBLA0A3P6CBJ33e-86A0A3P6CBJ3_BRAOL; Uncharacterized protein
STRINGBo4g049510.15e-86(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-85bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]