PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676765780
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 286aa    MW: 31151.9 Da    PI: 8.0072
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676765780genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.8e-18126180256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ ++tk+q   Lee F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  676765780 126 RKKLRLTKQQSALLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 180
                788899***********************************************98 PP
2HD-ZIP_I/II122.81.6e-39126215191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+k+q++lLEesF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ +l
    676765780 126 RKKLRLTKQQSALLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLK-AL 215
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.103122182IPR001356Homeobox domain
SMARTSM003896.1E-15124186IPR001356Homeobox domain
SuperFamilySSF466895.56E-18124190IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-17126180IPR009057Homeodomain-like
PfamPF000461.3E-15126180IPR001356Homeobox domain
CDDcd000867.44E-16126183No hitNo description
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
PfamPF021834.6E-10182216IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-25182225IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGLDDSCNTG LVLGLGLSPT PNNYNHTIKK SSSTVEHHLD PSLTLSLSGE SYKTKTVEMT  60
DAGAGDQIFR QSSSHSGISS FSSGRVKRER EISGGDGEEE AEETTERVVC SRVSDDHEDE  120
EGVSARKKLR LTKQQSALLE ESFKLHSTLN PKQKQALARQ LNLRPRQVEV WFQNRRARTK  180
LKQTEVDCEF LKKCCETLTD ENRRLQKELQ DLKALKMSQP FYMHMPAATL TMCPSCERLS  240
GGAGGAATGG GSGGTVAVDG GTGKGAFSIV TKPRFYSPFT NPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676765780
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412540.0AJ441254.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447389.11e-173PREDICTED: homeobox-leucine zipper protein HAT22
SwissprotP466041e-163HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A3N6QDA51e-169A0A3N6QDA5_BRACR; Uncharacterized protein
STRINGBra011786.1-P1e-169(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-156HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]