PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676765640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | DBB | ||||||||
Protein Properties | Length: 159aa MW: 17446.5 Da PI: 5.2394 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.7 | 3.7e-06 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e+ e++ C +++ lC+ C ++ H+ H +vp 676765640 4 QCEVCEKAEAEVLCCSDEAVLCKPCDTNVHEAnklfqrHHRVP 46 7*****************************7788999977776 PP | |||||||
2 | zf-B_box | 31.2 | 4.5e-10 | 58 | 95 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++ C+ ++e + +fC +++ llC+dC ++H g H+ 676765640 58 APLCDICQERKGYFFCLEDRALLCNDCDGAIHIGnsHQ 95 689******99*********************444587 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.722 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.83E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 5.5E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.1E-11 | 56 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.2 | 56 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.8E-8 | 58 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.21E-7 | 59 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MKIQCEVCEK AEAEVLCCSD EAVLCKPCDT NVHEANKLFQ RHHRVPLKKT ASPTSSAAPL 60 CDICQERKGY FFCLEDRALL CNDCDGAIHI GNSHQRFLLS GVQASDQSLT ENSGCSTSFS 120 SEPYQIHSKA SLVTQYSSEE TEARNSGETD KNPSVILSP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676765640 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY122916 | 1e-131 | AY122916.1 Arabidopsis thaliana putative zinc-finger protein (At4g10240) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013654798.1 | 1e-95 | B-box zinc finger protein 23-like | ||||
Swissprot | O82617 | 2e-88 | BBX23_ARATH; B-box zinc finger protein 23 | ||||
TrEMBL | A0A3P5Y0G4 | 3e-95 | A0A3P5Y0G4_BRACM; Uncharacterized protein | ||||
STRING | Bostr.25463s0295.1.p | 5e-97 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12502 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10240.1 | 7e-91 | DBB family protein |
Publications ? help Back to Top | |||
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