PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676765182
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 396aa    MW: 43181.9 Da    PI: 5.2206
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676765182genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-1856101147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd  l ++v+++G+++W++Iar ++ gR++k+c++rw + 
        676765182  56 KGPWSPEEDVVLSELVEKFGPRNWSLIARSIP-GRSGKSCRLRWCNQ 101
                      79******************************.***********985 PP
2Myb_DNA-binding48.61.8e-15108150145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r+++T+ Ed+ ++ a+  +G++ W+ Ia+ ++ gRt++ +k++w+
        676765182 108 RNPFTEAEDQAIITAHGIHGNK-WAVIAKLLP-GRTDNAIKNHWN 150
                      789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.31351106IPR017930Myb domain
SuperFamilySSF466891.95E-3154149IPR009057Homeodomain-like
SMARTSM007171.0E-1555104IPR001005SANT/Myb domain
PfamPF002491.7E-1756101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2657109IPR009057Homeodomain-like
CDDcd001677.89E-1558100No hitNo description
SMARTSM007171.8E-15107155IPR001005SANT/Myb domain
PROSITE profilePS5129421107157IPR017930Myb domain
PfamPF002491.0E-13108150IPR001005SANT/Myb domain
CDDcd001671.82E-11110153No hitNo description
Gene3DG3DSA:1.10.10.609.9E-23110156IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDGEIWRGSE TTELGEVQEA LADGRGVGDG DGAGEEEATR FVGEGTSGRG GKERVKGPWS  60
PEEDVVLSEL VEKFGPRNWS LIARSIPGRS GKSCRLRWCN QLDPSLKRNP FTEAEDQAII  120
TAHGIHGNKW AVIAKLLPGR TDNAIKNHWN ATLRRRCMDV ETLTTNIGTG NLVLEDSGFN  180
RTMNTIASSE ETLSSGGGGH VITPLVSSDG KEANSMEMSE EQCADKTNGE GISRQEGNND  240
PPTLFRPVAR LSSFNAYNHM ERSSSPCIQD QNKFQSCKQD TAMLRLLEGA YSERFVPQKC  300
GRGCCNNNPV GNFQKNSLLG PEFVDYLDPP TFPSYELAAI ATDISSLAWL RSGLESSSVR  360
AMEEAAGRLR PQGSRGHRDH YLVSEQGKSI TNVLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-38531561104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676765182
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407701.10.0transcription factor MYB1
SwissprotQ425750.0MYB1_ARATH; Transcription factor MYB1
TrEMBLV4LZ710.0V4LZ71_EUTSA; Uncharacterized protein
STRINGXP_006407701.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84922636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.10.0myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]