PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676765158
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family E2F/DP
Protein Properties Length: 295aa    MW: 33411.5 Da    PI: 7.8957
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676765158genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP76.82.2e-2469150471
    E2F_TDP   4 ksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 +Lr+++ k   ++ek+++ g++t++eva+eLv+e                 d+kn+rRR+YD++NVL al+li+k +k+ei+wkg
  676765158  69 GGLRHFSLK---VCEKVQSkGRTTYSEVADELVAEfalpdhtgeysdqqqkdDEKNIRRRVYDAFNVLLALDLITK-HKKEIQWKG 150
                69*******...*****999********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.0E-931294IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.103.8E-3865154IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.4E-2866150IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.9E-2268150IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.67E-1969151IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011382.9E-40174295IPR014889Transcription factor DP, C-terminal
CDDcd144581.79E-31174269IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.71E-34174274No hitNo description
PfamPF087814.3E-33175278IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MTIGSNSTRQ SHGSMPDQSG STSDSIDSSA ISMRTPSTYN TQEAASGGSK RKKKKRRFVA  60
GSDKSGRSGG LRHFSLKVCE KVQSKGRTTY SEVADELVAE FALPDHTGEY SDQQQKDDEK  120
NIRRRVYDAF NVLLALDLIT KHKKEIQWKG FPCNLEQLKP PCRCSCRSGT HFWQTEHLAF  180
TKRISKKALY LQELEEHHVG LQNLIRRNEQ LYSSDNVPNS AIALPFILVE TQPQAIVEVE  240
ISEDKQFVHF DFNSTPFVFH DEYTVLKTMN LCERMNLSLL AGSTTEPERS SMSEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3063157695PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15055RKKKKR
25056RKKKKRR
35156KKKKRR
45256KKKRR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676765158
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376906.14e-96transcription factor-like protein DPB isoform X1
RefseqXP_027354368.13e-96transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-92DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A445HVV81e-93A0A445HVV8_GLYSO; Transcription factor-like protein DPB isoform A
TrEMBLI1LFZ71e-93I1LFZ7_SOYBN; Uncharacterized protein
STRINGXP_008376906.11e-95(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.18e-92Transcription factor DP