PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676764988 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MYB_related | ||||||||
Protein Properties | Length: 195aa MW: 22810.7 Da PI: 5.8419 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.9 | 5.5e-09 | 77 | 119 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W +eE+e ++ + k++G++ W++Ia m + + q+ ++ ++y 676764988 77 IWNKEEHEWFLIGLKRFGKD-WEKIAVLMD-SKNPMQVALYAHNY 119 5*****************99.*********.**********9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.513 | 1 | 52 | IPR017884 | SANT domain |
SMART | SM00717 | 0.0061 | 2 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.29E-9 | 4 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00115 | 5 | 51 | No hit | No description |
PROSITE profile | PS51294 | 10.768 | 70 | 124 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.64E-10 | 73 | 124 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-6 | 73 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-7 | 74 | 122 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.10E-6 | 78 | 120 | No hit | No description |
Pfam | PF00249 | 2.6E-6 | 78 | 119 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MAANSWTREE NEQFKNALQL FSAFLPNRFE KIAEYLQKSV VGVIEHYQEL VDDLLEIRSE 60 ELIHAVAPSM YPVERTIWNK EEHEWFLIGL KRFGKDWEKI AVLMDSKNPM QVALYAHNYF 120 QWENAKNVMK RGGSKDITMW DINVDSTGQQ ESHVLSQSQP QQGTIAQEIG QHARTSDPNH 180 IFHDRTYTRE CKISL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676764988 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013730892.1 | 2e-68 | transcription factor DIVARICATA-like | ||||
TrEMBL | D7L913 | 4e-65 | D7L913_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0003_1071 | 6e-66 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15934 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-27 | MYB family protein |