PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 676764978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 162aa MW: 19157.4 Da PI: 7.8458 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 3e-17 | 93 | 136 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++ ++++ k++G+g+Wk+I+r + Rt+ q+ s+ qky 676764978 93 PWTEEEHKCFLEGLKRYGKGDWKKISRFVR-SRTPTQVASHAQKY 136 7*****************************.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2 | 2 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.9E-5 | 5 | 59 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-12 | 85 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.263 | 86 | 141 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.1E-19 | 88 | 141 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-18 | 89 | 140 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.9E-12 | 90 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-15 | 93 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.62E-12 | 93 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 162 aa Download sequence Send to blast |
MTPKHWTRTD DKRFEEALVR FPEEDFPDYR FEKIATYLEM TLEDVMHYYE ALVHDIDLIE 60 SGRYGIIDYS ESSGGISSHT TKHNEKDRKR GIPWTEEEHK CFLEGLKRYG KGDWKKISRF 120 VRSRTPTQVA SHAQKYFLRQ NVDSKAKKRS SIHDITSVDH AT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 676764978 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024015273.1 | 2e-66 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 2e-43 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | V4NQW2 | 4e-65 | V4NQW2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407533.1 | 7e-66 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5127 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-55 | MYB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|