PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676764742
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 405aa    MW: 46009.2 Da    PI: 4.5696
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676764742genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.42.5e-18191315128
        NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk.kgelvgl 102
                ++F  td  lv +yL+k+v + k     +i+++++y+ ePw Lp++            ++ +++++ + + r   + g+W atg +ke++++ k+e++g 
  676764742  19 LKFYATDVSLVGYYLRKRVGTGKD---GFITDINLYQDEPWLLPHA------------TSTREQTNRSVPGRgGSNGGTWTATGVKKEIIDSnKKEVIGY 103
                79******************9994...45***************32............3445556677788877889*************9867778*** PP

        NAM 103 kktLvfykg..rapkgektdWvmheyrl 128
                ++ L+++k+   +pkg+ t Wvm ey l
  676764742 104 RTELAYHKNakGKPKGVTTGWVMTEYWL 131
                *******65337899***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.63815160IPR003441NAC domain
SuperFamilySSF1019411.2E-2116143IPR003441NAC domain
PfamPF023651.5E-1118130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MERLQIGSER FTMANPSDLK FYATDVSLVG YYLRKRVGTG KDGFITDINL YQDEPWLLPH  60
ATSTREQTNR SVPGRGGSNG GTWTATGVKK EIIDSNKKEV IGYRTELAYH KNAKGKPKGV  120
TTGWVMTEYW LASEKEVVLC YLRDKSKNDN NIVVDQLPES KNGDKNIVFK QPERENTEDN  180
NNMISNALVS GVERWELDSE FGQNKMEYFD KATQEQQYRQ ISLPQRQVSG RTSKQLVIMD  240
HECVNQDKIS DQADQEAGIY QPAQQQGIND MCDPNDMFDM DELHDFTHQQ QPLIPTPQDM  300
MVPPLQGQDS RFSVQDMNPT CGAEGLGLQN MMGNSDTSTQ EQQFPQIYLP PQRQDYGSGH  360
NPLVIMEDEC VDQEEIFNLV DQESGITQPK QQQKMTVGDG VCHKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676764742
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144711.11e-86PREDICTED: NAC domain-containing protein 6-like
TrEMBLA0A3P5ZDB63e-85A0A3P5ZDB6_BRACM; Uncharacterized protein
STRINGXP_006404273.18e-62(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-14NAC domain containing protein 47