PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676764386
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 28507.5 Da    PI: 8.5815
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676764386genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.26.8e-31959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+++fs++gkl+eys+
  676764386  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYST 59
               79***********************************************96 PP
2K-box93.34.1e-3179170596
      K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                +  + e+  + +++ e+++Lk++ie L+++qRh+lGedL+ +s keLq+LeqqL+++lk+iRs+Kn+l++++i+elq+k ke ++  +a ++
  676764386  79 QLIAPESDVNTNWSMEYNRLKAKIELLEKNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRSRKNQLMYDSINELQRKIKEREKVLRAQQE 170
                555556667889*******************************************************************9998876665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.184161IPR002100Transcription factor, MADS-box
CDDcd002652.62E-43279No hitNo description
SuperFamilySSF554555.62E-34289IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-2585163IPR002487Transcription factor, K-box
PROSITE profilePS5129715.60288178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD  60
SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA KIELLEKNQR HYLGEDLQAM  120
SPKELQNLEQ QLDTALKHIR SRKNQLMYDS INELQRKIKE REKVLRAQQE QWDQQNHGHN  180
MPPPPPTQQH QIQHPYMLSH QPSPFLNMGG LYQEEDPMAM RRNDLDLSLE PVYNCNLGCF  240
AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-22174173MEF2 CHIMERA
6byy_B6e-22174173MEF2 CHIMERA
6byy_C6e-22174173MEF2 CHIMERA
6byy_D6e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676764386
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1094030.0AF109403.1 Sinapis alba MADS C-2 protein mRNA, complete cds.
GenBankAY0879560.0AY087956.1 Arabidopsis thaliana clone 39890 mRNA, complete sequence.
GenBankZ164210.0Z16421.1 A.thaliana mRNA for AP1 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105460.11e-168PREDICTED: floral homeotic protein APETALA 1
RefseqXP_013652316.11e-168floral homeotic protein APETALA 1
SwissprotP0DI141e-170AP1_BRARP; Floral homeotic protein APETALA 1
TrEMBLA0A397YS551e-167A0A397YS55_BRACM; Uncharacterized protein
STRINGBostr.10273s0459.1.p1e-169(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-149MIKC_MADS family protein