PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676763650
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family SRS
Protein Properties Length: 726aa    MW: 80159.7 Da    PI: 7.0898
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676763650genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702165.53e-515707164154
     DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkq..salsstklssaeskkele 101
                 ++ C+dCGn+akk+C + RCRtCCksrg++CathvkstWvp++    r    +++ss++       ++k+ + ++s+k+  s+l    +++++ ++++ 
  676763650 570 EEKVCRDCGNRAKKECLFDRCRTCCKSRGYNCATHVKSTWVPSSSSHRRSGSRSSSSSSD-------RKKKLKIDSSDKHnpSSLLIVPTATSSRQEKSF 662
                6789**************************************998877755444433332.......222222222222200333333333333333334 PP

     DUF702 102 tsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                ++ lP +++++avfr++rv++v++ ++ e++Yq++v+i+GhvfkG+L+++G+++
  676763650 663 KEGLPGKIEAPAVFRRTRVTAVSNnEQSEIGYQATVTISGHVFKGFLHYYGVDH 716
                445*******************9967889***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.40.3202.8E-1837139IPR013812Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain
SuperFamilySSF493032.3E-1739137IPR006102Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich
PfamPF163531.9E-1442135IPR032312Beta-galactosidase, domain 4
Gene3DG3DSA:2.70.98.105.3E-87154432IPR014718Glycoside hydrolase-type carbohydrate-binding
SuperFamilySSF746509.89E-79158433IPR011013Galactose mutarotase-like domain
SMARTSM010382.2E-97162453IPR004199Beta galactosidase small chain/ domain 5
PfamPF029291.4E-70166432IPR004199Beta galactosidase small chain/ domain 5
PfamPF051427.0E-46572715IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-25573613IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.7E-27666714IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0009341Cellular Componentbeta-galactosidase complex
GO:0004565Molecular Functionbeta-galactosidase activity
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MALIFFCMHC IMSLCCLRGQ ALLSTNQGFI DGCHAEAQPL SLQVANAYFF NTTEELDLSW  60
KIHGDGVELG AGTLSIPVIK PQDSFDMEWK SGPWFSFWND TNAGELFLTI TAKLLNPTRS  120
LEAGHLLSST QIPLPSKRQI IPQAIKKMDA IITCETVGDF IKISQQDSWE LMINVQKGSI  180
EGWKVQGVLL MNEAILPCFW RAPTDNDKGG EDSSYFSRWK AAQLDNVEFL VESCSVKSIT  240
DKAVEIEFVY LGSSASDSSK SDALFKVNVT YTIYGSGDII TSWYVVPKSD LPPLPRVGIE  300
FHIEKTLDRV EWYGRGPFEC YPDRKSAAHV GIYEHNVGDM HVPYIVPGEC GGRTDVRWVT  360
FRNKDGVGIY ASTFGSSSPM QMNASYYTTG ELDRATHEED LIKGQNIEVH LDHKHMGIGG  420
DDSWTPCVVS GYGSDFDLGH LQGSTSQLES FLAYKLLNAI QLRHESVPNS STRFIITATV  480
ANPPSLLPWP PNQPSPSSTP FSPAVAVTIP DHSSSSSAAV SAARIITPDY MLGLRNIVFL  540
PPPPSHITHP TPVNLTAVEE NNKARNSNVE EKVCRDCGNR AKKECLFDRC RTCCKSRGYN  600
CATHVKSTWV PSSSSHRRSG SRSSSSSSDR KKKLKIDSSD KHNPSSLLIV PTATSSRQEK  660
SFKEGLPGKI EAPAVFRRTR VTAVSNNEQS EIGYQATVTI SGHVFKGFLH YYGVDHNKAF  720
PCLSKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cvm_A4e-33414326341006Beta-galactosidase
6cvm_B4e-33414326341006Beta-galactosidase
6cvm_C4e-33414326341006Beta-galactosidase
6cvm_D4e-33414326341006Beta-galactosidase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676763650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2221340.0AK222134.1 Arabidopsis thaliana mRNA for beta Galactosidase - like protein, complete cds, clone: RAFL22-95-N04.
GenBankAY0917800.0AY091780.1 Arabidopsis thaliana At3g54435 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427143.10.0PREDICTED: uncharacterized protein LOC104712044 isoform X1
RefseqXP_019084873.10.0PREDICTED: uncharacterized protein LOC104712044 isoform X2
TrEMBLA0A0D3BY370.0A0A0D3BY37_BRAOL; Uncharacterized protein
STRINGBo4g119970.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2682522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54430.18e-74SHI-related sequence 6