PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676763008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | ERF | ||||||||
Protein Properties | Length: 169aa MW: 18937.5 Da PI: 10.6165 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.1 | 2.9e-20 | 49 | 99 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +kGVr+++ +g+++AeIrdp++ g +r++lg++ taeeAa+a+++a+ k++g+ 676763008 49 FKGVRRRP-WGKYAAEIRDPNKHG--ARIWLGTYETAEEAAAAYDRAAFKMRGA 99 8*******.**********95544..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.05E-15 | 48 | 108 | No hit | No description |
SMART | SM00380 | 3.8E-35 | 48 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-32 | 48 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.723 | 48 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-10 | 49 | 60 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-23 | 49 | 107 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-14 | 49 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-10 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MQGDLTSYNC SSVLDSIRRH LLEDDSETLH SFPSTSPDLE STKRRGGNFK GVRRRPWGKY 60 AAEIRDPNKH GARIWLGTYE TAEEAAAAYD RAAFKMRGAK AKLNFPHLIG IDGPEPVKVT 120 KRRLSSPGSI SRSPLAKRRN TDIINLTARV PCLAFHYFSH MTPPPSFAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-28 | 45 | 106 | 2 | 63 | ATERF1 |
3gcc_A | 3e-28 | 45 | 106 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676763008 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013601915.1 | 2e-78 | PREDICTED: ethylene-responsive transcription factor 13-like | ||||
Refseq | XP_013722190.1 | 3e-78 | ethylene-responsive transcription factor 13 | ||||
Swissprot | Q40479 | 2e-38 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A087HKC9 | 2e-80 | A0A087HKC9_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HKC9 | 4e-81 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 3e-27 | ethylene-responsive element binding factor 13 |
Publications ? help Back to Top | |||
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