PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676763008
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 169aa    MW: 18937.5 Da    PI: 10.6165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676763008genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-204999356
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               +kGVr+++ +g+++AeIrdp++ g  +r++lg++ taeeAa+a+++a+ k++g+
  676763008 49 FKGVRRRP-WGKYAAEIRDPNKHG--ARIWLGTYETAEEAAAAYDRAAFKMRGA 99
               8*******.**********95544..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.05E-1548108No hitNo description
SMARTSM003803.8E-3548112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-3248107IPR001471AP2/ERF domain
PROSITE profilePS5103223.72348106IPR001471AP2/ERF domain
PRINTSPR003674.5E-104960IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2349107IPR016177DNA-binding domain
PfamPF008472.5E-144998IPR001471AP2/ERF domain
PRINTSPR003674.5E-107288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MQGDLTSYNC SSVLDSIRRH LLEDDSETLH SFPSTSPDLE STKRRGGNFK GVRRRPWGKY  60
AAEIRDPNKH GARIWLGTYE TAEEAAAAYD RAAFKMRGAK AKLNFPHLIG IDGPEPVKVT  120
KRRLSSPGSI SRSPLAKRRN TDIINLTARV PCLAFHYFSH MTPPPSFAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2845106263ATERF1
3gcc_A3e-2845106263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676763008
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601915.12e-78PREDICTED: ethylene-responsive transcription factor 13-like
RefseqXP_013722190.13e-78ethylene-responsive transcription factor 13
SwissprotQ404792e-38ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A087HKC92e-80A0A087HKC9_ARAAL; Uncharacterized protein
STRINGA0A087HKC94e-81(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-27ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]