PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676762930
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 324aa    MW: 35864.9 Da    PI: 5.6047
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676762930genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.1e-29143203259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                dD ++WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+ dp+++++tY+g+H+++
  676762930 143 DDVFSWRKYGQKDILGAKYPRSYYRCTFRntqNCNATKQVQRSDGDPTIFDVTYKGTHTCS 203
                8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.643137200IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-28137203IPR003657WRKY domain
SuperFamilySSF1182903.92E-25141203IPR003657WRKY domain
SMARTSM007745.3E-40142204IPR003657WRKY domain
PfamPF031062.4E-26143202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDMLNLLSEL MHGLKAAKQL QTELGTAPSQ PPPWLSSSSS SSCLTTENMK ETLLHQIISS  60
YEKAILMVNG SITLDSPTTE MVSYPVANTG KVPESPTSIN GSPTSEEFLD GGSKDCSKKR  120
KMLVKWTEQV KISPERGLEG PHDDVFSWRK YGQKDILGAK YPRSYYRCTF RNTQNCNATK  180
QVQRSDGDPT IFDVTYKGTH TCSQGIPPPE KRETRKPNPT TVNYQNDLLD NLRANLTVHT  240
NGIERDGFSF PVTTPFYSYD PINTNFSNGG GTICHVGNSS PSDFTGLIST NTSTGSSPMF  300
DVDFQFDPTV EIETDFHTFL HDST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-181442001874Disease resistance protein RRS1
5w3x_D1e-181442001874Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676762930
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423966e-97AF442396.1 Arabidopsis thaliana WRKY transcription factor 41 (WRKY41) mRNA, complete cds.
GenBankAY1336866e-97AY133686.1 Arabidopsis thaliana clone C103116 (D) unknown protein (At4g11070) mRNA, complete cds.
GenBankBT0011076e-97BT001107.1 Arabidopsis thaliana clone C103116 (A) putative WRKY family transcription factor (At4g11070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396960.11e-171probable WRKY transcription factor 41
RefseqXP_018458950.11e-172PREDICTED: probable WRKY transcription factor 41
SwissprotQ8H0Y81e-143WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLV4LF341e-170V4LF34_EUTSA; Uncharacterized protein
STRINGXP_006396960.11e-171(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-145WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]