PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676762766

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Nin-like

Protein Properties

Length: 1004aa MW: 110927 Da PI: 5.2186

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676762766	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.1	8.2e-29	667	717	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ 676762766 667 EKNVSLSVLQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 717 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.881	651	737	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-27	669	717	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.34E-22	893	989	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.0E-23	902	983	No hit	No description
PROSITE profile	PS51745	22.154	904	986	IPR000270	PB1 domain
SMART	SM00666	1.6E-25	904	986	IPR000270	PB1 domain
Pfam	PF00564	8.8E-18	905	985	IPR000270	PB1 domain
CDD	cd06407	2.05E-38	905	985	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1004 aa Download sequence Send to blast
MTKTKTHRSV AYASTKQKLR ETERERERER ESDSIPFVSK PLFCYKAYEL RLPEEATIFE 60 SADVTDEVID EMEHPFASSR EKGFGFQDIP TEQMDGLSFG SGVRNMMSDD MLNSSSTSEL 120 MNFDSFATWF NSPSATDILL AQYGLSTSQP MPFEAITSSH AAEPRAATFS GLTRSFHDLE 180 SSCYVEERSS EQELSSQIHC SLDSDELSGK RRRVANQKNC FPNALNCTVP RSMSHSLDEK 240 MLKALSLFIE SSGSGDGILA QVWTPIKTGD QYVLSTCDQA YLLDPRLSQY REVSRKFTFP 300 SQAKQCSFPG LPGRVFISGV REWTSNVMYY NTDEYLRIKH AIDNEVRGSI AIPIFEASGT 360 SCCAVMELVT SKEMPNFDME MDSVCRALQA VNLRTSAIPR PQYLSSNQRG ALAEIQDVLR 420 AVCHAHKLPL ALAWIPCSYD KGGKDQSVRA YGPNSGENCV LCIEETACYV NDMEMEGFVH 480 ACLEQRLREK EGIVGKAFVS NQPFFSSDVK AYDIGEYPLV HHARKYGLHA AVAIKLRSTY 540 TGEDDYILEL FLPPNMKGSL EQQLLLDSLS GTMQRICRTL RTVSDVGATK KEVSKAGFRN 600 GEMYNFPQKT CSGNLQTILL DPELDSTRSL FSDMSSDKDN GSTGSQGTFE QGVGKSRKPE 660 KKKSTTEKNV SLSVLQQHFS GSLKDAAKSL GVCPTTLKRI CRQHGIMRWP SRKINKVNRS 720 LKKIQTVLDS VQGVEGGLKF DSATGEFVAV GAFIKEYDNQ NGPATDGNNA HVIGQEDMAE 780 DTSFELLKSN SVDNAIKLEE DIITNGPFME VNASGQQWDW MAEQSGFNGS EGINNSSPGI 840 ADGLDSTIRC SGHTIEPNRS MSCSMSDSTN GSGAVMLGSS STSLDDSNQV RTHKSNSGES 900 GSTTLTVKAT YREDTIRFKF EPSVGCSQLY KEVGKRFKLQ DGSFQLKYLD DEEEWVMLVT 960 DSDLLECLEI LYGMGKHTVK FLVRDLPAPI GSSAGSNGYL GSGL

Sequence ? help Back to Top

Protein Sequence Length: 1004 aa Download sequence Send to blast

MTKTKTHRSV AYASTKQKLR ETERERERER ESDSIPFVSK PLFCYKAYEL RLPEEATIFE  60
SADVTDEVID EMEHPFASSR EKGFGFQDIP TEQMDGLSFG SGVRNMMSDD MLNSSSTSEL  120
MNFDSFATWF NSPSATDILL AQYGLSTSQP MPFEAITSSH AAEPRAATFS GLTRSFHDLE  180
SSCYVEERSS EQELSSQIHC SLDSDELSGK RRRVANQKNC FPNALNCTVP RSMSHSLDEK  240
MLKALSLFIE SSGSGDGILA QVWTPIKTGD QYVLSTCDQA YLLDPRLSQY REVSRKFTFP  300
SQAKQCSFPG LPGRVFISGV REWTSNVMYY NTDEYLRIKH AIDNEVRGSI AIPIFEASGT  360
SCCAVMELVT SKEMPNFDME MDSVCRALQA VNLRTSAIPR PQYLSSNQRG ALAEIQDVLR  420
AVCHAHKLPL ALAWIPCSYD KGGKDQSVRA YGPNSGENCV LCIEETACYV NDMEMEGFVH  480
ACLEQRLREK EGIVGKAFVS NQPFFSSDVK AYDIGEYPLV HHARKYGLHA AVAIKLRSTY  540
TGEDDYILEL FLPPNMKGSL EQQLLLDSLS GTMQRICRTL RTVSDVGATK KEVSKAGFRN  600
GEMYNFPQKT CSGNLQTILL DPELDSTRSL FSDMSSDKDN GSTGSQGTFE QGVGKSRKPE  660
KKKSTTEKNV SLSVLQQHFS GSLKDAAKSL GVCPTTLKRI CRQHGIMRWP SRKINKVNRS  720
LKKIQTVLDS VQGVEGGLKF DSATGEFVAV GAFIKEYDNQ NGPATDGNNA HVIGQEDMAE  780
DTSFELLKSN SVDNAIKLEE DIITNGPFME VNASGQQWDW MAEQSGFNGS EGINNSSPGI  840
ADGLDSTIRC SGHTIEPNRS MSCSMSDSTN GSGAVMLGSS STSLDDSNQV RTHKSNSGES  900
GSTTLTVKAT YREDTIRFKF EPSVGCSQLY KEVGKRFKLQ DGSFQLKYLD DEEEWVMLVT  960
DSDLLECLEI LYGMGKHTVK FLVRDLPAPI GSSAGSNGYL GSGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	213	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676762766

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397520.1	0.0	protein NLP8
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	V4LGT8	0.0	V4LGT8_EUTSA; Uncharacterized protein
STRING	XP_006397520.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]