PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676762530
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 314aa    MW: 33980.4 Da    PI: 7.6216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676762530genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11248293655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  676762530 248 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 293
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.056242292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-14245306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-11246297No hitNo description
Gene3DG3DSA:4.10.280.103.0E-13247304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-13248298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9248293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MYPPSSTSKS TATDGGDVDN NPYDSATGAT RDFSSLGSQT RYNPPPPRQQ HNSNVVGLGD  60
YISGDPSTIG FDSGASSSSP LFRHRSSPAG FYDQHLPTDP NEGTGFSLGR PNGGYGGGRG  120
GAERGPSRLK SELRFSGGSS SSHQEHNSLP RISEVEAAAA AINGVASTSM SFGNDHNNWD  180
NSSSHISFTI DEPGKRSKTT DFFTLETQFS MPQTSLEMAR MESMLNIPED SVPCRVRAKR  240
GCATHPRSIA ERERRTRISG KLKKLQELVP NMDKQTSYAD MLDLAVEHIK GLQHQVESLE  300
KGMERCTCGA CKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676762530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434880.10.0PREDICTED: transcription factor bHLH129-like isoform X1
SwissprotQ9ZW811e-144BH129_ARATH; Transcription factor bHLH129
TrEMBLR0HDD91e-179R0HDD9_9BRAS; Uncharacterized protein
STRINGXP_010508466.11e-180(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.21e-136bHLH family protein