PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676762346

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

S1Fa-like

Protein Properties

Length: 118aa MW: 12885.4 Da PI: 11.1757

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676762346	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	133.8	4.3e-42	50	118	2	70
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++a+veakGlnPGlivllvvggll++fl++ny++y+yaqknlPP+kkkP+skkklkreklkqGv+vPGe 676762346 50 GKAAVEAKGLNPGLIVLLVVGGLLVTFLIANYAMYMYAQKNLPPKKKKPISKKKLKREKLKQGVPVPGE 118 5789****************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	5.3E-38	54	118	IPR006779	DNA binding protein S1FA
ProDom	PD019013	0.001	54	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MAQKLAWKSR RVILKNVRKT DLRFIESPSR SLPQPTELGS GAMSSEGSAG KAAVEAKGLN 60 PGLIVLLVVG GLLVTFLIAN YAMYMYAQKN LPPKKKKPIS KKKLKREKLK QGVPVPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676762346

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF372892	4e-71	AF372892.1 Arabidopsis thaliana At2g37120/T2N18.12 mRNA, complete cds.
GenBank	AY085439	4e-71	AY085439.1 Arabidopsis thaliana clone 1517 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006296264.1	5e-45	DNA-binding protein S1FA2
Swissprot	Q42337	3e-29	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	R0G194	1e-43	R0G194_9BRAS; Uncharacterized protein
STRING	Cagra.0666s0032.1.p	2e-44	(Capsella grandiflora)
STRING	XP_006296264.1	2e-44	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23806	4	4