PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676762004
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 330aa    MW: 36577.6 Da    PI: 6.4429
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676762004genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.63.1e-1560109255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r +h+  E+rRR++iN++f+ Lre++P++     +K + a+ L ++++Y+++Lq
  676762004  60 RSKHSVTEQRRRSKINERFQILREIIPNS----EQKRDTASFLLEVIDYVQYLQ 109
                899*************************8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-1856129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-2257131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.06958108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-1360113No hitNo description
PfamPF000101.3E-1260109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1164114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MRTGKGNQEE EDYGEEDFSS KREGPSSNNS NTAANRGFSI RVLIGFESDA KENDKASAIR  60
SKHSVTEQRR RSKINERFQI LREIIPNSEQ KRDTASFLLE VIDYVQYLQE KVQKYEGSYP  120
GWSQEPTKLT PWRNNHWRVQ SLANHPVALN NGSGPVIPFP GKFEENAVAS SAPTILAEMQ  180
NPVESDKGRA AVFKPVDSQP ELDDKELPPV QPIHPLVHRE LANNECPATS DGIGQSNNDL  240
VIEGGTISIS TVYSHELLSS LTQALQNAGI DLSHAKLSVQ IDLGKRANQG LTTHDNSSNK  300
CRIHYHLTLK ALHGQGIQAL RENLNILISG
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676762004
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391066.10.0transcription factor BIM2 isoform X1
SwissprotQ9CAA41e-166BIM2_ARATH; Transcription factor BIM2
TrEMBLV4KEV10.0V4KEV1_EUTSA; Uncharacterized protein
STRINGXP_006391066.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59872745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-169BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]