PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676761478

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

C3H

Protein Properties

Length: 436aa MW: 47395.2 Da PI: 9.3414

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676761478	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.5e-06	391	414	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+ff r+ Ck Gd+C + H+p 676761478 391 KPCMFFGRGRGCKLGDSCLYLHDP 414 69********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.206	388	415	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.26E-5	390	417	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MKKSRVSWPS DSMLCQVKLF QTQDCPAKVG TQSCTKPKPS NLPPGYQGTA YSTMPNVSHI 60 PQIRWKRPPK FLISDHLLVA SGQESTVTTS ENLRIAKVLE AFYPHRSLIP TRPSISPAVE 120 IESYDYSKTP DIRLTPIEED EPEAVAVESS HSSKAPPSVF GLGPDLGLAT SAALSTLMET 180 KDQGSLVDVD LLVKLLSDPI IIKKLLNDTT AAKPLETGNN TIKPPPLHVS TSSAMDRNSP 240 PIAHPVPRIV PVLAAQSIVS HVPIQPPVSS APLVLHTCPL SSALKPWPRV EDSLKPSSVD 300 DVVVSESQCQ SLNVSTSNTW NVSGVLESAG TGTDAPSRNG SSPMNITRHD YFKNLIREHG 360 TVPPATNGTN NYKGRVDNNN NMKAVKVKVQ KPCMFFGRGR GCKLGDSCLY LHDPKRLWTD 420 VAAPEFPRAK RPKFRT

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MKKSRVSWPS DSMLCQVKLF QTQDCPAKVG TQSCTKPKPS NLPPGYQGTA YSTMPNVSHI  60
PQIRWKRPPK FLISDHLLVA SGQESTVTTS ENLRIAKVLE AFYPHRSLIP TRPSISPAVE  120
IESYDYSKTP DIRLTPIEED EPEAVAVESS HSSKAPPSVF GLGPDLGLAT SAALSTLMET  180
KDQGSLVDVD LLVKLLSDPI IIKKLLNDTT AAKPLETGNN TIKPPPLHVS TSSAMDRNSP  240
PIAHPVPRIV PVLAAQSIVS HVPIQPPVSS APLVLHTCPL SSALKPWPRV EDSLKPSSVD  300
DVVVSESQCQ SLNVSTSNTW NVSGVLESAG TGTDAPSRNG SSPMNITRHD YFKNLIREHG  360
TVPPATNGTN NYKGRVDNNN NMKAVKVKVQ KPCMFFGRGR GCKLGDSCLY LHDPKRLWTD  420
VAAPEFPRAK RPKFRT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676761478

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006393834.1	1e-162	zinc finger CCCH domain-containing protein 68
Swissprot	Q9FH61	1e-137	C3H68_ARATH; Zinc finger CCCH domain-containing protein 68
TrEMBL	E5F726	1e-174	E5F726_9BRAS; Zinc finger CCCH-type protein
STRING	XP_006393834.1	1e-161	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8704	11	12