PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676761316 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 361aa MW: 39874.3 Da PI: 5.3328 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31 | 4.7e-10 | 196 | 243 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq 676761316 196 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 243 8**************************....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.01E-16 | 190 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.68E-11 | 190 | 247 | No hit | No description |
PROSITE profile | PS50888 | 15.542 | 192 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-17 | 192 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-7 | 196 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-10 | 198 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MEKQQTERTL NYLPLGQSDP FGNGNNEGTI GDFLGRFCNP QEISPLALQS YTLNPQISEG 60 FPIRFPPYPG QFGSDREFGS QQTGQESNKS SLLDPDSDRV QTTKSNSRKR KSIPVGGNGK 120 ESPASSSLTA SNSKISGEIV GSKAGKRSKQ DEAGSSKNVV EKCDDSKGDN KDETKAPEPI 180 KDYIHVRARR GQATDSHSLA ERARREKISE RMTLLQDLVP GCNRITGKAV MLDEIINYVQ 240 SLQRQVEFLS MKLATINPRM EFNANAALST EMIQQGESLT QSLYAMACSE QRLPSGYYSL 300 AKNMPRFSDT QFPSSDGFVQ AETPGFWEND LQSIVQMGFG DIQQQSNNNC SEPTLQMKLE 360 P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 111 | SRKRKS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00376 | DAP | Transfer from AT3G23690 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676761316 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006418851.1 | 0.0 | transcription factor bHLH77 | ||||
Swissprot | Q9LK48 | 0.0 | BH077_ARATH; Transcription factor bHLH77 | ||||
TrEMBL | V4L4R9 | 0.0 | V4L4R9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006418851.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7406 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23690.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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