PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676760886
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 357aa    MW: 38657.1 Da    PI: 7.3052
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676760886genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331e-10290335655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  676760886 290 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 335
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.814284334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-14287348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.48E-11288339No hitNo description
Gene3DG3DSA:4.10.280.102.2E-13289347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-8290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-12290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MYQSSSSTSS SSQRSSLPGG GSGGLIRYGS APGSLINSMV DEVIGGSNAA RDFNYPPPDN  60
NFLGHFFNGA DSSSLRSDSM TCGVNSSDGH RHLGNDNNSN NKDLLLDRSY GGFNEISQHK  120
INDLGAGNSS GSYSLARQRS SPADFFSYLS GEKNSFSLNQ PTSDYNPQGG SNAGRGQSRL  180
KSQLSFTSHD PLSRISEVNE TSVHDGSGHS FSAASFGAAT DSWDDGSGSI GFTVTRPTKR  240
SKDMDSGLFS QYSLPSDTSM NYMDNYMQLP EDSVPCKIRA KRGMATHPRS IAERERRTRI  300
SGKLKKLQDL VPNMDKQTSY SDMLDLAVQH IKGLQHQLQN LKKEQENCTC GCSERQS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676760886
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3175490.0KF317549.1 Brassica oleracea var. capitata PA1 (PA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119114.10.0PREDICTED: transcription factor bHLH128
SwissprotQ8H1020.0BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A1J3CWR70.0A0A1J3CWR7_NOCCA; Uncharacterized protein
STRINGBra015456.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-173bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]