PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676760524 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 507aa MW: 57048.1 Da PI: 6.9178 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.2 | 8.3e-10 | 300 | 341 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR + +++f L+ l+P++ +K++ a+i+ +A+e+Ik+L 676760524 300 TERERRVHFKDRFGDLKNLIPNP-----TKNDRASIVGEAIEHIKEL 341 6**********************.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.55E-11 | 285 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.46E-9 | 290 | 346 | No hit | No description |
PROSITE profile | PS50888 | 13.522 | 292 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-9 | 292 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-6 | 298 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-7 | 300 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MTPNLPHKAT STQKVSFIDE TAPGDRLRNG KTERIVMGPM QRREKRHGTD RGERDRNIES 60 CSSKSLLCVN SDALTGKVSP RIISRLDGNM FEDIGCFDPN APGDTTAESH FSPAEPPPSV 120 TVFGSTSNSN CSLEDLSEFH LSPQDCSLAA APVHHLHINA TPSGDHQLRS SMPQNFQDPA 180 YAPQPNIWDN GYQDFVNLGP NHTTPHLLSL LQLPRSSLPH FANPSLQDII MTSSSACDSF 240 DPLFHLNFPF QPPNGTSLGV EDQTELNGVN NLIYAQENNN PENGLNRKPR GSRKRKVFPT 300 ERERRVHFKD RFGDLKNLIP NPTKNDRASI VGEAIEHIKE LLRTIEEFKM LLEKKRIVKQ 360 RNKRCRIEEG EDDVGDENYK AQSEVVEQCL VNKNNNSLRC SWLKRKSKFT EVDVRIIDDE 420 VTIKIVQKKK INCLLFVAKV IDQLQLDLHH AAGAQIGEHH SFLFNTKICE GSSVYASAIA 480 DRVMQVLEKQ YMEVLSSNNG YHCYTSD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676760524 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584762.1 | 0.0 | PREDICTED: transcription factor bHLH89 | ||||
Refseq | XP_013696065.1 | 0.0 | transcription factor bHLH89 | ||||
Swissprot | Q9LND0 | 0.0 | BH089_ARATH; Transcription factor bHLH89 | ||||
TrEMBL | A0A078F9Z0 | 0.0 | A0A078F9Z0_BRANA; BnaC05g04240D protein | ||||
TrEMBL | A0A0D3C813 | 0.0 | A0A0D3C813_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EBF7 | 0.0 | A0A3P6EBF7_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g007310.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1355 | 26 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06170.2 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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