PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676760384 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | NF-YC | ||||||||
Protein Properties | Length: 190aa MW: 21916.9 Da PI: 6.2233 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.5 | 1.3e-55 | 43 | 147 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+f+leltlr+w+h+eenkrrtl+k+diaaa++rtd+fdflvdi+p 676760384 43 QLQVFWANQmqeIEQTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFVLELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 142 89******988889************************************************************************************** PP NF-YC 98 rdelk 102 rdelk 676760384 143 RDELK 147 **975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.65E-33 | 38 | 137 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.0E-22 | 65 | 128 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.7E-38 | 66 | 143 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MEHSEEAQPQ QGVMDYVPRG VPSSNMAHVA FQQAHQFHHH HHQLQVFWAN QMQEIEQTTD 60 FKNHTLPLAR IKKIMKADED VRMISAEAPV IFAKACEMFV LELTLRAWIH TEENKRRTLQ 120 KNDIAAAISR TDVFDFLVDI IPRDELKEEG LGVTKGTIPT AVGSPPYYYL QQQQGMMPWP 180 QGIPEQHHDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-57 | 51 | 143 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 121 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676760384 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC797142 | 1e-154 | KC797142.1 Brassica napus transcription factor subunit NF-YC2 (NF-YC2) gene, complete cds; kinetoplast. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104135.1 | 1e-109 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_018508660.1 | 1e-109 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q8LCG7 | 4e-93 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | M4CGK1 | 1e-108 | M4CGK1_BRARP; Uncharacterized protein | ||||
STRING | Bra003334.1-P | 1e-109 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 5e-87 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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