PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676760282
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 287aa    MW: 33299.4 Da    PI: 5.241
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676760282genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.87.1e-152067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l ++++  G g+W++ ar  g++R +k+c++rw++yl
        676760282 20 KGPWTLEEDTILTNYIAHNGEGRWNLLARSSGLKRKGKSCRLRWLNYL 67
                     79******************************99************97 PP
2Myb_DNA-binding50.64.3e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
        676760282  73 RGNLTPEEQLLILELHCKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 116
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9641567IPR017930Myb domain
SMARTSM007173.2E-121969IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-2919114IPR009057Homeodomain-like
PfamPF002491.1E-122067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-212174IPR009057Homeodomain-like
CDDcd001672.49E-82267No hitNo description
PROSITE profilePS5129424.95468122IPR017930Myb domain
SMARTSM007171.0E-1372120IPR001005SANT/Myb domain
PfamPF002494.9E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2375121IPR009057Homeodomain-like
CDDcd001671.23E-1077116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MLDVMKKRCN ENEEGAAQRK GPWTLEEDTI LTNYIAHNGE GRWNLLARSS GLKRKGKSCR  60
LRWLNYLKPD IKRGNLTPEE QLLILELHCK WGNRWSKIAQ YLPGRTDNEI KNYWRTRVQK  120
QARQLNIDSS SHQFLEVVRS FWVPRLIYKM KDNSITNTKA PPSDLLGPVL RDNDFSYYSG  180
SNNMNCSTFM SQELTNISQS MDLSDLETTN SMCLKGSLGS SNQCVSEDYS SFPCLEEEYI  240
VTTMGNSDIL PVQDCHVADS TYEEDVTQDP MWNMDDIWQF EEYAHFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24201227108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15157LKRKGKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676760282
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756630.0KM975663.1 Brassica napus MYB transcription factor 116.1 (MYB116.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103061.10.0PREDICTED: transcription factor MYB24-like
SwissprotQ9C9G71e-100MYB62_ARATH; Transcription factor MYB62
TrEMBLM4D7M20.0M4D7M2_BRARP; Uncharacterized protein
STRINGBra012482.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-164myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]