PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676760230
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NF-YC
Protein Properties Length: 345aa    MW: 39304.6 Da    PI: 9.9419
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676760230genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1711.4e-53371352100
      NF-YC   2 lksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100
                lk+fw++q+e ++dfk helPlarikki+kad dv+misaeaP++++kace+fi++lt+rswlhaeenkrrtl+k+di+aav+r + fdfl+d+vprde
  676760230  37 LKNFWHQQMEAVEDFKSHELPLARIKKIMKADRDVRMISAEAPIVFAKACEMFIVDLTMRSWLHAEENKRRTLQKTDISAAVARNFAFDFLLDVVPRDE 135
                9************************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.49E-3017127IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.6E-3448118IPR009072Histone-fold
PfamPF008081.0E-1955118IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDHNVNLRYH QPPQPHQQIY SQQLPQTASF NQGNQELKNF WHQQMEAVED FKSHELPLAR  60
IKKIMKADRD VRMISAEAPI VFAKACEMFI VDLTMRSWLH AEENKRRTLQ KTDISAAVAR  120
NFAFDFLLDV VPRDESVAGD HQGYVAVPHL DGGVQYYYPP VIDGSGMYAP QQQVWPSSWP  180
AASGGGDGED DGGCKKLTTP SQQGGGVKKE KEVKVGLDHH GIRAHIGFRS LRRKGDGKKR  240
PVKKKGRLKK KRQETDRLMT ERHERKSFNT ENRPETKKKK KNKEKRKMET DEAYSTRSYP  300
VCGLRRASAS ISERVTASEE DLQMSSLKLP STYVENLALD CIMQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-4243133595NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237251KKRPVKKKGRLKKKR
2238250KRPVKKKGRLKKK
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676760230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402087.12e-90nuclear transcription factor Y subunit C-6
SwissprotQ9FGP72e-73NFYC6_ARATH; Nuclear transcription factor Y subunit C-6
TrEMBLV4KZY04e-89V4KZY0_EUTSA; Uncharacterized protein
STRINGXP_006402087.17e-90(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50480.11e-70nuclear factor Y, subunit C6
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]