PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676759698
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 271aa    MW: 30850.2 Da    PI: 7.6078
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676759698genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.44.5e-202673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll+++v+  G g+W+++a++ g++R++k+c++rw +yl
        676759698 26 KGPWTPEEDKLLAEYVTINGEGRWSSVAKCAGLNRSGKSCRLRWVNYL 73
                     79********************************************97 PP
2Myb_DNA-binding506.9e-1679123147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++
        676759698  79 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 123
                      7888******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.6172173IPR017930Myb domain
SuperFamilySSF466891.53E-3123120IPR009057Homeodomain-like
SMARTSM007172.7E-162575IPR001005SANT/Myb domain
PfamPF002491.9E-182673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-242780IPR009057Homeodomain-like
CDDcd001675.90E-122873No hitNo description
PROSITE profilePS5129424.15974128IPR017930Myb domain
SMARTSM007171.8E-1378126IPR001005SANT/Myb domain
PfamPF002499.9E-1479123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2381127IPR009057Homeodomain-like
CDDcd001671.54E-983123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MLDWGVDQVH HRNHDRDPHQ QQGCRKGPWT PEEDKLLAEY VTINGEGRWS SVAKCAGLNR  60
SGKSCRLRWV NYLRPGLKRG QITPQEEGII LELHSLWGNK WSTIARYLPG RTDNEIKNYW  120
RTHYKKKEKS FSKQEKVKRS RKPLDLKPQP QAQPQPQNQP SQLVSEDNMN LDNEQNIAAS  180
FSYPTSVFSD QFHMPESVAA TSSDQSVIDE GNLWGSLWSL DKDDPHRFGG GSEQRTATNI  240
AEKFTGGGIE TPPCGSWDYS YNGLDTGGYI F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24261277107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676759698
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696010.11e-164myb-related protein 305
TrEMBLA0A3P6E1541e-162A0A3P6E154_BRAOL; Uncharacterized protein
STRINGBo9g009020.11e-162(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-132myb domain protein 121